Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77610 417 / 2e-148 EamA-like transporter family protein (.1) AT1G21870 415 / 1e-147 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 133 / 1e-37 Nucleotide-sugar transporter family protein (.1) AT3G11320 129 / 8e-36 Nucleotide-sugar transporter family protein (.1) AT5G04160 120 / 1e-32 Nucleotide-sugar transporter family protein (.1) AT3G10290 117 / 4e-31 Nucleotide-sugar transporter family protein (.1) AT1G12500 114 / 1e-29 Nucleotide-sugar transporter family protein (.1) AT3G17430 82 / 6e-18 Nucleotide-sugar transporter family protein (.1) AT1G48230 81 / 1e-17 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 80 / 3e-17 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025645 [exp] 457 / 2e-164 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10042700 [exp] 434 / 5e-155 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10029663 [exp] 418 / 8e-146 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10028255 [exp] 136 / 2e-38 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 136 / 2e-38 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 135 / 3e-38 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 128 / 2e-35 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 117 / 8e-32 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 114 / 7e-30 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177200 [exp] 422 / 2e-150 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 422 / 3e-150 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.016G043200 [exp] 132 / 3e-37 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 131 / 1e-36 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 128 / 1e-35 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 127 / 1e-34 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 124 / 5e-34 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 124 / 5e-34 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 124 / 1e-33 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 121 / 6e-33 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10018189 pacid=23145209 polypeptide=Lus10018189 locus=Lus10018189.g ID=Lus10018189.BGIv1.0 annot-version=v1.0 ATGAGCAAATGGATCTTCCAGAAATTGGAATTCAAGTTCCCGCTGACTGTATCGTGTGTCCACTTCATATGCTCAGCGATCGGAGCATACATTGCAATCA AGGTGCTGAAAATCAAACCCCTCATAGTGGTTGAGTCACAGGATCGATGGCGGAGGATATTTCCCATGTCGTTTGTCTTCTGCATCAACATTGTGCTGGG CAATGTCAGCTTGCGGTACATTCCGGTCTCGTTCATGCAAACAATCAAGTCATTTACTCCTGCAACTACAGTTGTTTTGCAGTGGTTAGTTTGGAGGAAA TACTTTGACTGGCGCATCTTGGCTTCGTTAGTGCCTATCGTTGGAAGAATACTGCTGACGTCAGTGACAGAGCTTAGTTTCAATGTGTTTGGGTTCTCTG CAGCTCTCCTTGGCTGTTTAGCAACTTCTACAAAGACTATCCTTGCTGAATCTTTACTGCACAGCTACAAATTCGACAGTATAAACACAGTGTACTACAT GGCACCTTTGGCAACCATGATCCTGGGACTATCAGCAATGCTACTGGAAGGCAACGGTGTTCTCGATTGGTTCCAGACGCACGACTCGATGAATTCTTCC CTCTTCATCATATTCGTTTCTGGAGTTCTAGCCTTCTGCCTCAACTTCTCCATCTTCTACGTCATCCATTCAACGACCGCTGTCACCTTCAGCGTCGCTG GGAACCTTAAGTGA
AA sequence Show only first row Show all	>Lus10018189 pacid=23145209 polypeptide=Lus10018189 locus=Lus10018189.g ID=Lus10018189.BGIv1.0 annot-version=v1.0 MSKWIFQKLEFKFPLTVSCVHFICSAIGAYIAIKVLKIKPLIVVESQDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRK YFDWRILASLVPIVGRILLTSVTELSFNVFGFSAALLGCLATSTKTILAESLLHSYKFDSINTVYYMAPLATMILGLSAMLLEGNGVLDWFQTHDSMNSS LFIIFVSGVLAFCLNFSIFYVIHSTTAVTFSVAGNLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77610			EamA-like transporter family p...		Lus10018189 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10026557 [exp]	2.0	0.7585
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	3.7	0.7629
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	4.0	0.7404
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	7.8	0.7632
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	8.8	0.7593
AT3G27390			unknown protein		Lus10014881 [exp]	13.8	0.7575
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	14.9	0.7182
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	22.4	0.7446
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042099 [exp]	22.4	0.6188
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	24.0	0.6932

Compare expression of checked genes

Lus10018189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.