Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58900 287 / 1e-96 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 280 / 8e-94 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G05790 234 / 2e-76 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 231 / 6e-75 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G01200 215 / 1e-68 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 181 / 2e-55 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 169 / 1e-51 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 171 / 6e-51 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 147 / 1e-41 MYB Homeodomain-like transcriptional regulator (.1) AT3G10580 122 / 6e-33 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040696 [exp] 530 / 0 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 271 / 2e-90 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10014837 [exp] 222 / 3e-71 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 219 / 5e-70 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 213 / 6e-68 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10027781 [exp] 201 / 4e-63 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 176 / 5e-53 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 175 / 1e-52 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10041088 [exp] 164 / 2e-49 AT5G04760 233 / 1e-77 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248800 [exp] 334 / 7e-115 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 328 / 2e-112 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.016G112300 [exp] 291 / 3e-98 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 289 / 2e-97 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.010G193000 [exp] 257 / 7e-85 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 245 / 2e-80 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 191 / 3e-59 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 190 / 1e-58 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 184 / 2e-56 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.010G240800 [exp] 170 / 1e-51 AT5G04760 232 / 3e-77 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018209 pacid=23179282 polypeptide=Lus10018209 locus=Lus10018209.g ID=Lus10018209.BGIv1.0 annot-version=v1.0 ATGAGGTGGGAAATGGAAGTTCTGTCACCGGCATCGTACCTATCGAGCACTGACAGCATGTTAATCGAAGACGGGAAAATGACGACGAAATGGACTCGAG GGGAGAACAAGCTGTTCGAGAACGCTCTAGCGCTCTACGACAAGGAAACTCCGGACAGGTGGCAGAAGGTGGCGGCTCTGATTCCTGGGAAAACAGTGGG CGACGTGATCAATCAGTATAGGGAATTGGAAGCCGATGTTAGCAGTATAGAGGCAGGGCTGATTCCGATTCCAGGATACTGCGCTGCTTCTCCTTTCACT CTGGAGTGGGTTAGTAGCAACGGATTCGACGGATTCAAGCAGTCTTATGGTCTCTCCGGGAAGAGATCTTCCTCCGGCGGCCGGACTCCCGATCAGGAGA GAAAGAAAGGCGTTCCCTGGACGGAGGAAGAGCATAAGTTGTTTCTGATGGGATTGAAGAAGTACGGGAAGGGAGATTGGAGGAACATCTCTCGCAATTT CGTGGTGACGAGGACGCCTACTCAAGTGGCGAGCCATGCTCAGAAGTACTTCATCAGGCAGTTATCTGGAGGGAAAGATAAGAGGAGAGCAAGCATCCAT GATATCACCACTGTGAATCTCAACGACACCACTAGAAGTTCTAATTCTCCAGACAGTAGTAAGCAAGGCTCTTCACCTGATCAGTCAATGATGGGTGGTG CATTCCAGTGGAACACTCACCATGGTAGAGTCGGTGGAGCAGCTGCAGGAGCAGCCATGGCTTTTGGTTCATCAACGCACGGAGGTAACAACATGTTCAT TTGCCCTCCTTATGGTGGATTCAACAGCAGCTCTTATAATAGCGGCGTCAAAACTGAAGGTGGTTATGATGAAGGAAGCATGGCTTTCCAGATGCAATCT GCAGCACAGAGCTACCCTCATGCTTGA
AA sequence Show only first row Show all	>Lus10018209 pacid=23179282 polypeptide=Lus10018209 locus=Lus10018209.g ID=Lus10018209.BGIv1.0 annot-version=v1.0 MRWEMEVLSPASYLSSTDSMLIEDGKMTTKWTRGENKLFENALALYDKETPDRWQKVAALIPGKTVGDVINQYRELEADVSSIEAGLIPIPGYCAASPFT LEWVSSNGFDGFKQSYGLSGKRSSSGGRTPDQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIH DITTVNLNDTTRSSNSPDSSKQGSSPDQSMMGGAFQWNTHHGRVGGAAAGAAMAFGSSTHGGNNMFICPPYGGFNSSSYNSGVKTEGGYDEGSMAFQMQS AAQSYPHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58900	MYB		Homeodomain-like transcription...		Lus10018209 [exp]	0	1
AT5G58900	MYB		Homeodomain-like transcription...		Lus10040696 [exp]	1.0	0.8434
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031830 [exp]	12.0	0.8010
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	12.8	0.7909
AT1G24620			EF hand calcium-binding protei...		Lus10024574 [exp]	27.5	0.6837
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	30.5	0.7610
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	32.0	0.7266
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	34.9	0.7279
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031655 [exp]	37.0	0.6799
AT3G22550			Protein of unknown function (D...		Lus10006102 [exp]	51.8	0.7104
AT1G57680			unknown protein		Lus10008842 [exp]	57.3	0.6975

Compare expression of checked genes

Lus10018209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.