Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58870 961 / 0 FTSH9 FTSH protease 9 (.1) AT3G47060 960 / 0 FTSH7 FTSH protease 7 (.1) AT1G50250 372 / 7e-118 FTSH1 FTSH protease 1 (.1) AT1G06430 367 / 4e-116 FTSH8 FTSH protease 8 (.1) AT5G42270 367 / 5e-116 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 364 / 5e-115 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G15250 348 / 6e-109 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G07510 321 / 2e-97 FTSH10 FTSH protease 10 (.1) AT2G29080 320 / 5e-97 FTSH3 FTSH protease 3 (.1) AT2G26140 303 / 1e-91 FTSH4 FTSH protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040695 [exp] 1390 / 0 AT5G58870 1047 / 0.0 FTSH protease 9 (.1) Lus10005868 [exp] 1144 / 0 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 1130 / 0 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10012277 [exp] 370 / 4e-120 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 375 / 5e-119 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10021824 [exp] 375 / 7e-119 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 362 / 4e-114 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 362 / 7e-113 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 318 / 4e-96 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043100 [exp] 1045 / 0 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.001G249100 [exp] 1012 / 0 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.005G249200 [exp] 378 / 6e-120 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 376 / 2e-119 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 362 / 3e-114 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 362 / 8e-114 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 349 / 2e-109 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G033600 [exp] 325 / 9e-99 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 320 / 6e-97 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.006G227700 [exp] 311 / 1e-94 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0126 [flax] [poplar] PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10018210 pacid=23179388 polypeptide=Lus10018210 locus=Lus10018210.g ID=Lus10018210.BGIv1.0 annot-version=v1.0 ATGGCGTCGATAATAGAAACTCTGTTGCCAATTTCGCACATCAAGTTTCCCGCGAATTCCAACCGTAGGTATCGTTGTCCTCCTCATTCTAGGTTTCCTC GCGCTGTTAACTTGAGTAATGGATCTTTATCGCGCGGAGCACTGCGAGGCTCCAGTTTATGGGGAAGTAGGGTGTCATGGAGGAGTTGTAGATTGAGAGA GCATAGAATATCGGCGAATTGTCAGGACGGCAGCGATTCGACGGCGAGCTCAAGCGAGCAGAGAACGGAAACCGATGTTCAGCAGCAGGCTAGCGGTACG GATACGACGCCGAGTACGGGTCCGAACCAGAGGAGGAAGGAGAAGCAAGAGAAAGGAGGCGAGTGGTGGTGGTGGTGGAAAGGACAAGATTGGAAATGGC AGCCATTAATAGAAGCTCATGAGGTTGGGGTGTTGCTTTTGCAATTGGGGATTGTTATGACCGTTACGAGGCTGTTGCGGCCTGCCATTCCGTTACCGGG GTCGGACCCGAGAATGCAGACGACTACTGTTAGTGTACCGTACAGCGAATTTTTAAGCAAGATTAACAGCAATAAGGTGGAGAAAGTGGAGGTTGATGGA GTACATACTATGTTTATGTTGAAAAACGAGGGAGCTGGTGATTCCGAGGGAACGGTTGATGGTAAGTGGCAGGATTCTGAGTCTTTGTTGAGGAGCCTGG CACCGACCACGAGGAGGATTGTTTACACTACTACTAGACCTAGTGACATCAAGACTCCGTATGAGAAGATGGTTGAGAATCAGGTGGAGTTTGGATCGCC TGATAATGAGTCTGGTGGATTCTTTAACTCAGCTATGATAGGTTTTTTATATCTCCTTGGGATTGCTGTATTTCTCTACAGGTTCCCTATTAGCTTTTCT CAGCATTCAACTGGTCAGATTAGGAACCGGAAATCTGGGGGTTCGGGAGGTTCAAAAGTTGCTGAGCAAGGGGATACAATTACGTTTGCTGATGTTGCTG GTGTCGATGAGGCTAAGGAAGAGTTGGAAGAAATAGTGGAATTTCTCAAGAATCCGGACAGGTACACAAGAGTTGGTGCCCGTCCTCCACGGGGTGTTCT GCTGGTTGGTCTTCCTGGTACGGGAAAGACCCTTCTGGCAAAGGCTGTTGCTGGAGAAGCTGAAGTCCCTTTTATAAGCTGTTCAGCTAGTGAGTTTGTG GAGTTATATGTTGGAATGGGTGCTTCCCGAGTAAGAGATCTGTTTGCCCGAGCTAAGAAGGAGACCCCATCAATCATATTTATTGATGAGATTGATGCTG TGGCAAAAAGTCGTGATGGCAAGTTTCGCATTGTCAGCAATGATGAGCGGGAGCAAACTTTAAACCAGTTGCTTACTGAAATGGATGGATTTGATAGCAA CTCTGCTGTAATTGTTCTCGGAGCCACAAATCGCTCAGATGTACTAGATCCTGCACTTCGCAGACCGGGAAGATTTGATCGAATAGTCACGGTGGAAGCA CCTGATAGGAATGGAAGAGATGCCATTTTGAAAGTGCATGCTACCAAGAAGGAGCTTCCTTTAGGCAAGGATGTCAACCTCAGTGACATTGCTTCCATGA CCACTGGATTCACTGGGGCTGATCTTGCTAATCTAGTAAATGAAGCTGCTCTGTTGGCTGGAAGGAAACGTAAATCAGTAGTAGAGAAAATTGATTTCAT TGAGGCCGTAGAGCGATCTATAGCTGGCATAGAGAAGAAAACAGCGAAGCTGCAAGGGAGTGAGAGGGCTGTTGTTGCACGACATGAAGCGGGTCATGCA GTTGTAGGCACTGCTGTTGCTAGTCTCCTTCCTGGACAGCCACGTGTGGAGAAGCTAAGCATTTTACCGAGGACAGGAGGTGCATTGGGCTTTACATATA CACCTCCGACAAATGAAGACAGGCATTTACTCTTCATCGATGAATTACAAGGTCGCTTGGTCACTCTTCTTGGAGGACGTGCAGCGGAAGAAGTTGTGTA CTCAGGCCGTGTATCTACCGGCGCAATAGATGATATCCGGCGAGCTACAGACATGGCATACAAGGCAATAGCTGAATATGGTCTCAATCAAACCATCGGT CCTGTATCCGTGGGAACACTATCCGGAGGTGACGAGTCTGGAGGATGGGGAAGTGAGCAGGGTCATCTTGTTGATATGGTACAAAAGGAGGTACAGACAT TGCTACAATCAGCATTAGATGTGGCGATGTGCGTTCTGCGAGCTAATGCCACCGTCTTGGAAGGGCTCGGTGCTCATCTCGAAGAGAATGAGAAAGTAGA AGGTGAAGCGCTGCAGGAATGGTTGAAACTGGTAGTTCCACCAGAGGAGCTGGCTTCATTTTTAAGAGGCAAGCAAGCATCTCTCCTTCCTCTGTCATGA
AA sequence Show only first row Show all	>Lus10018210 pacid=23179388 polypeptide=Lus10018210 locus=Lus10018210.g ID=Lus10018210.BGIv1.0 annot-version=v1.0 MASIIETLLPISHIKFPANSNRRYRCPPHSRFPRAVNLSNGSLSRGALRGSSLWGSRVSWRSCRLREHRISANCQDGSDSTASSSEQRTETDVQQQASGT DTTPSTGPNQRRKEKQEKGGEWWWWWKGQDWKWQPLIEAHEVGVLLLQLGIVMTVTRLLRPAIPLPGSDPRMQTTTVSVPYSEFLSKINSNKVEKVEVDG VHTMFMLKNEGAGDSEGTVDGKWQDSESLLRSLAPTTRRIVYTTTRPSDIKTPYEKMVENQVEFGSPDNESGGFFNSAMIGFLYLLGIAVFLYRFPISFS QHSTGQIRNRKSGGSGGSKVAEQGDTITFADVAGVDEAKEELEEIVEFLKNPDRYTRVGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV ELYVGMGASRVRDLFARAKKETPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRIVTVEA PDRNGRDAILKVHATKKELPLGKDVNLSDIASMTTGFTGADLANLVNEAALLAGRKRKSVVEKIDFIEAVERSIAGIEKKTAKLQGSERAVVARHEAGHA VVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPPTNEDRHLLFIDELQGRLVTLLGGRAAEEVVYSGRVSTGAIDDIRRATDMAYKAIAEYGLNQTIG PVSVGTLSGGDESGGWGSEQGHLVDMVQKEVQTLLQSALDVAMCVLRANATVLEGLGAHLEENEKVEGEALQEWLKLVVPPEELASFLRGKQASLLPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	0	1
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	3.5	0.8881
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	4.2	0.8862
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	10.7	0.8523
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	12.0	0.8293
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	12.1	0.8698
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	13.4	0.8524
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	14.5	0.8287
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	16.6	0.8529
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	19.3	0.8483
AT4G35890			winged-helix DNA-binding trans...		Lus10014255 [exp]	23.5	0.7767

Compare expression of checked genes

Lus10018210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.