Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30070 646 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 569 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 561 / 0 Potassium transporter family protein (.1) AT2G40540 553 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT3G02050 521 / 5e-174 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT4G23640 494 / 1e-163 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT4G13420 472 / 2e-155 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 470 / 7e-154 Potassium transporter family protein (.1) AT2G35060 424 / 2e-136 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 415 / 4e-133 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030857 [exp] 587 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 586 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10034215 [exp] 553 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10030539 [exp] 544 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 520 / 4e-174 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10027004 [exp] 478 / 7e-158 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 466 / 6e-153 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10013304 [exp] 451 / 7e-146 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012993 [exp] 445 / 8e-144 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148200 [exp] 793 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 694 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.009G073500 [exp] 609 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.008G147400 [exp] 572 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.010G094300 [exp] 569 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.014G144900 [exp] 566 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.019G056500 [exp] 563 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.002G237500 [exp] 561 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.013G083400 [exp] 550 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.003G133900 [exp] 495 / 3e-164 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10018270 pacid=23179268 polypeptide=Lus10018270 locus=Lus10018270.g ID=Lus10018270.BGIv1.0 annot-version=v1.0 ATGGATCCTGAATCCGCCTCCGTCACTCGTGACTCTCGCCTGAAATTTTATAAGTCGACTCTGAGCCTAGCATACCAGAGTCTTGGTGTTGTCTATGGCG ACCTGAGTATTTCGCCCATATATGTATATTCGAGTACATTTTCTGGGAGGTTGAGACTTCACGAGGAAGATGATGAAATTCTAGGGGTACTGTCTCTGGT TTTCTGGACTTTGACTCTAATCCCTCTCTGCAAGTACATTATTTTTGTATTAGGAGCAGATGATAATGGTGAAGGCGGGACCTTTGCTCTTTATTCATTG CTTTGCCGGAATGCCAGGGTGGGTCTCTTGTCCGCTCCTGCTGTACCCGATTGCGGCATATCTTCTCCAGACACAGGACAACCTGTCAAAGAAACTCGAG CTGGCTCCCTCTTGAAGGATTTACTTGAAAAGCATCATAATTCTCGGATCATACTGCTGTTAGTTGTGCTTCTCGGAACAAGCATGGTCATCAGTGATGG CATATTGACCCCTTCAATGTCAGTCCTTTCTGCTGTTTATGGCTTGAAAATCAAAGCCACTGGTCTACATGAGGATTATGCGGTTTTAGTGACTTGTCTC ATTTTAGTGGGCCTGTTTGCACTTCAGCATGTTGGGACACATAGGGTTGGCTTTCTTTTTGCTCCTATCCTCCTTTCATGGCTTCTATGCATCAGCGCTG TTGGAATTTATAATGTCATACGGTGGAACCCGAGTATTGTGAGTGCACTTTCACCATATTATGCATACAACCTTTTCAAAAAGACTGGGAAGGATGGCTG GACTTCTCTTGGAGGGATTGTCCTTTGCATTACAGGTGCTGAGGCCATGTTTGCTGATCTTGGTCATTTCTCAAAACTTTCTATCAGGATTGCATTCACG GCAGTCGTTTATCCTTGCCTTATTCTTGCCTATATGGGTGAAGCTGCCTATCTTTCCAAGCACAAGGATGACCTCCAAAGAAGCTTCCATAGAGCTATCC CAGGTTTGATGTTCTGGAATCTGGAATTTCAATGTCTTAAACCTAGGTGTGTTCTTTTTATGATTAAAATTGCTCTTACGTACCCTCTTTGGCTTCCTAT CAGAGCCTGTATTTTGGCCAGTATTTGTTTATTTTGGCCGTTATTTATATTTGCAACTCTTGCAACAGTGGTGGGAAGTCAAGCTATCATATCCGGAACT TTCTCAATCATTAGCCAGTGCAGGGCATTGAAGTGTTTTCCCCGTGTTAAGATAATACACACTTCAGAGCGGATACATGGGCAAATTTACATTCCAGAGG TTAACTGGATCCTGATGGTATTGTGTCTTGTTGTTGTGGTCTCCTTTAGGGACACAGACAAGATCGGCAATGCATATGGCCTTGCAGTAATCACTGTAAT GTTCATGACAACATGCTTGATGTTTCTAGTGATTGTTATGGTTTGGAAATGGCAAGTCCTCATAGCCGCAGCTTTCGTACTTGTTTTTGGATCCATAGAA CTCCTCTACTTATCTTCCTGCCTTGCTAAGGTCCACGAAGGAGGCTGGCTTCCTCTTGTCTTCTCCGTGGTAGTTATGACCACAATGGTGACGTGGCACT ATGGGACTTTCAAGAAACAGTCGTACGCCAGTTTGTCACCCGCCGTCTCGGCCCACCGGAGCTCTGCCTTTATCGGTGTATCGTCAGGCTTGGGTATAAA GATGCGCTTCTCCGGAGTAGAAGCAGCAGATTGCAAGGATCTCATGGATTGCCAAGCTGAGATTGAGGCTCCGACTAGACAGAAGAAGCTGAGATTCCGA GGGGTGGGATGTAGCAACAAGGAAATGGAGGATCTGGAAGTAGCTAGAGAAGCTGGCGTTGCGTATATGATGGGGAACACTACCGTCCTGGCGATGGAAA CATCGTCACCGTTCAAGAAGTTTGTCATAAACGTACTGTACGGGTTCTTGAGACAGAACTGTCGCCGCCCAGCTGAAGCATTCGGGGTTCCGAAGACTAA TCTGGTTGAAGTGGGAATGAAGGATGAATTCAAAACGCAGAATGCAGAGGATGACAAGAACAAGAAGAAATGTGCAGTAAGGCTGAAACAAATGATAGAC TGGAAAATGGGAACACAGAACAATAAAAGGAATAAGAGTAGGGATGTTTCCTCTTCAGACATGGGAGGAGTTGTCATGCTTGGCGGGAGGAGAGGAAGGA TGAAGAGGAACATGAGTGGAAGGCGGAGGAGCAGGAACTCCGAAGACCTGATGATCGGGGAGGTTGCGGTTTCTGCGTTTCGATCGTCCATAGAAGTAGC ATGCCGCTCCCACCAGAAGGAAGAACACTATCAGCGGAAGCGATATCACCACTATCAACTCCATCCTAATTTCCTCCTTGTTGGTATGTCAAGCTCCACC TCTCTATATGTCTGA
AA sequence Show only first row Show all	>Lus10018270 pacid=23179268 polypeptide=Lus10018270 locus=Lus10018270.g ID=Lus10018270.BGIv1.0 annot-version=v1.0 MDPESASVTRDSRLKFYKSTLSLAYQSLGVVYGDLSISPIYVYSSTFSGRLRLHEEDDEILGVLSLVFWTLTLIPLCKYIIFVLGADDNGEGGTFALYSL LCRNARVGLLSAPAVPDCGISSPDTGQPVKETRAGSLLKDLLEKHHNSRIILLLVVLLGTSMVISDGILTPSMSVLSAVYGLKIKATGLHEDYAVLVTCL ILVGLFALQHVGTHRVGFLFAPILLSWLLCISAVGIYNVIRWNPSIVSALSPYYAYNLFKKTGKDGWTSLGGIVLCITGAEAMFADLGHFSKLSIRIAFT AVVYPCLILAYMGEAAYLSKHKDDLQRSFHRAIPGLMFWNLEFQCLKPRCVLFMIKIALTYPLWLPIRACILASICLFWPLFIFATLATVVGSQAIISGT FSIISQCRALKCFPRVKIIHTSERIHGQIYIPEVNWILMVLCLVVVVSFRDTDKIGNAYGLAVITVMFMTTCLMFLVIVMVWKWQVLIAAAFVLVFGSIE LLYLSSCLAKVHEGGWLPLVFSVVVMTTMVTWHYGTFKKQSYASLSPAVSAHRSSAFIGVSSGLGIKMRFSGVEAADCKDLMDCQAEIEAPTRQKKLRFR GVGCSNKEMEDLEVAREAGVAYMMGNTTVLAMETSSPFKKFVINVLYGFLRQNCRRPAEAFGVPKTNLVEVGMKDEFKTQNAEDDKNKKKCAVRLKQMID WKMGTQNNKRNKSRDVSSSDMGGVVMLGGRRGRMKRNMSGRRRSRNSEDLMIGEVAVSAFRSSIEVACRSHQKEEHYQRKRYHHYQLHPNFLLVGMSSST SLYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10018270 [exp]	0	1
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10027318 [exp]	1.7	0.7632
					Lus10007244 [exp]	3.0	0.8107
AT1G05510			Protein of unknown function (D...		Lus10021483 [exp]	4.5	0.8074
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	8.7	0.7518
AT2G27410	B3		Domain of unknown function (DU...		Lus10015934 [exp]	16.3	0.6264
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	20.6	0.7406
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	21.7	0.7591
AT1G06510			unknown protein		Lus10031457 [exp]	22.3	0.6562
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	22.4	0.7299
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	24.7	0.7093

Compare expression of checked genes

Lus10018270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.