Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 138 / 6e-33 transmembrane receptors;ATP binding (.1.2) AT1G27180 137 / 1e-32 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 127 / 9e-30 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G36930 124 / 7e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G17050 116 / 3e-26 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19500 115 / 7e-26 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT5G45050 111 / 1e-24 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45260 110 / 2e-24 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G12020 107 / 2e-23 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT5G41540 107 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037406 [exp] 941 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 898 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10020238 [exp] 859 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10000945 [exp] 797 / 0 AT1G69550 112 / 3e-25 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 790 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 695 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004115 [exp] 648 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10008026 [exp] 565 / 0 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001039 [exp] 538 / 0 AT5G36930 248 / 4e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053200 [exp] 189 / 3e-49 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T005501 [exp] 165 / 1e-41 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 163 / 5e-41 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 157 / 4e-39 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 150 / 5e-37 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G004599 [exp] 150 / 6e-37 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.004G088500 [exp] 149 / 2e-36 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.T002066 [exp] 146 / 9e-36 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 140 / 1e-33 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 140 / 1e-33 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018308 pacid=23179335 polypeptide=Lus10018308 locus=Lus10018308.g ID=Lus10018308.BGIv1.0 annot-version=v1.0 ATGCAACTTAAAGAAGTACCTGGTAGTATTGATGAGGTGCAGCTTAGATTGAAGATTAGCTATAATGAGTTGACCCATAATGAAAAACAAATCTTTCTCG ACATAGCCTGTTTTTTCATCGGAGAGGATAAAGAATTGCCCGTCCATATGTGGAGTGATTGTAAATTTTATCCGGAAAGTGGGATTAGGACTCTTGTTCT TAGATCCTTGATAAAAATTGATGAGATCGATCGGTTCTGGATGCACGATCATCTCAGAGATCTTGGTAGAGCCATCGTTACCGAGGAAGATGCTGAATGT CCACACAATCGCAGCAGGATATGGTCTACCAAGGATGCCATGAACATGCTGGAAAATGGGGAGGCAACTGATCGAGTCGAAATGCTTAGGCTTGACGTGC CATGGGGATATCACAGTGAGAGCAAACATTTTGAGAAGTTGTCAAGGTTACGGTACCTTGACATGAGCCTTTCTTTGCTGACCGGGGAGTTCAGTGAAAT ACTTCCTAATCTCCGATGGCTTAGGCTGCCTCGTTGCCAGTATGTCCTCTCTGATTTCAACTTTACGAATGTTGTAATTCTCGAATTACCAGATTGCGAA GTAGCTGATAATTGGAGGGGATGGAAGAATTTTAAGGTGGCGCAGAAGCTGAAAGTTATAAATCTACGCAACTGCTATAAGTTCAAAAGAGTGCCGGACC TTTCCCAATGTGCAAGCCTAGAGTCGATAGATCTGACTCTTTGTGCAGGGGTGAAGGGGGAACTCAACATCAGCAATTTCATGAATCTGAAAGTGGTCAG GCTTCATGGAACTGAAATATCATTAGCAGGTGACATGGGAAAGCTTCAAAAACTCGAAGAGATTAAAACGGGGAAATTGGCCTGGGGAGCTGAAAAAGAA GTACCTATGCTCCCCACAAGCTTAAAACGCCTAACCATCTCTTCCCCTCGGGTCCCCAATCTTCTGGAGCTTAAAGACCTGGAGGAGCTTCACTTTGAGA ACTGTGGCAACACTCCTGAAATTCCTGGGGATGTATGGCAGCTGACTAAGTTAAAGACTTTGAAGATGGTCAACTGCATCTGCCAAGGTAGCCTGCTGCT AAATCCGGACGGTACCCTTCCATCATCTCTAACCTGCCTTGTCGTCGACTGGAGTGAGGGTTTGACTAGGCTGCCGAATCTTGCAAATCTGAGTAATTTG ACGGAACTACGGCTGATTCACTTCAGTGCAAGTGAAATCCATGGTCTCGGGAAGCTTAGAGTGCTGGAAGCACTAGAAATATCCGGATCCATGAGTTTGA ATCACCTCCATGGTCTCAATAATCTCATGCACCTGAAAGAGCTGATCCTCAAAAGTTGCGGACTAAAGGGTCTTCCCAATCTATCGGATATGATCAAGTT GCACAAGCTAGTGATTGTTAAGTGTCCGTTACTTTCTGAAATTCAGGGTCTGGGTGAAATGAAGCAGTCTTTGTTACATCTGGAAGTAAGTTGTTGTGAC AGGCTAAGCGAAATGGATGGCCTTGAATCACTGGAAGCTCTGGAAAGTTTGACATTGGAGTCAACTTCACTATCACCAGATATCAGTGACCCGTTGTCGA TGTTAACCCTGAAAGAAGATGAGGATATTCCCCTCGATTTCCACCAGTACCTCGATCCACGTGGACCATTTCCTGACCTCTCACGTCTGCAAAACTTAAA ACAACTGCGTGTCGCTGGGTGGAGACTGTTCCCCAAATTCATAGAACTTGGGCGATTAAAATCGTTACAATCCCTAGAATTGAAGGCCTGCAAGTCTCTT AAGAGGTTGTCTATCCTCTCAAGAATTGAATATTTGGAGACGCTTGATGTTAGTGGTTGCATACGGCTGGTTGAGGTCCCGGGCCTCGACAGACTGGGAT CGTTGCGGAAGCTGAACATGTCCAACTGTTGGTCGCTCGAGGAGTTGCCTAATCTATCTGGCTTGAAGAGTCTGCACGTTTTAGACGTCAGTGGATGCTT TAACCTGGTTGGGGTTATTGGTCTGGAGAAACTGGAGTCATTGCGAGAGTTAAACATGGGTCATTGCAGGTCAATTAAGGAGCTGCCCGATATGTCCCGT CTCAAGAACCTGTTGAGATTAAATCTCAAGGGATGCACAAATCTGAAGAATGTTAAAGGACTCACGAAACTGAAGAGCTTGTGGTTTGTGCGTATGGAGA AAAGGTTACTAGTGAAGCATCCTTTGCAAATGGCTGTATGGGCTGGGAGGGAATTGGGACAATCACCTTTTATCATACTCCCTTTGCTTCTGGTTTCGTT CAAGGTTGTCAGGCATTGGATAAAGGCAGGTGCTTCGGATCCTTTCTACAACCCGGTCAACGACTATGTTATCCTTCCCACTGCATTTGAAATCGAAACA CACAAGGAGAAGGGTCCGCAGTTCACTTCTCTAAAGGAGGAATGGGAGATAGTCTCGGGAGATCAAGACGACTATGTTATCCTTCCCACTGCATTCGAAA TTGAAACACACAAGGAGAAGGGTCTGCAGTTCACTTCTCTAAAGGAGGAATGGGAGATAGTCTCGGGAGATCAAGACGAGCATGACGGAATGGACGGCTC GAAGCCTGTGGTAAGCTCAATGATACAACCATAA
AA sequence Show only first row Show all	>Lus10018308 pacid=23179335 polypeptide=Lus10018308 locus=Lus10018308.g ID=Lus10018308.BGIv1.0 annot-version=v1.0 MQLKEVPGSIDEVQLRLKISYNELTHNEKQIFLDIACFFIGEDKELPVHMWSDCKFYPESGIRTLVLRSLIKIDEIDRFWMHDHLRDLGRAIVTEEDAEC PHNRSRIWSTKDAMNMLENGEATDRVEMLRLDVPWGYHSESKHFEKLSRLRYLDMSLSLLTGEFSEILPNLRWLRLPRCQYVLSDFNFTNVVILELPDCE VADNWRGWKNFKVAQKLKVINLRNCYKFKRVPDLSQCASLESIDLTLCAGVKGELNISNFMNLKVVRLHGTEISLAGDMGKLQKLEEIKTGKLAWGAEKE VPMLPTSLKRLTISSPRVPNLLELKDLEELHFENCGNTPEIPGDVWQLTKLKTLKMVNCICQGSLLLNPDGTLPSSLTCLVVDWSEGLTRLPNLANLSNL TELRLIHFSASEIHGLGKLRVLEALEISGSMSLNHLHGLNNLMHLKELILKSCGLKGLPNLSDMIKLHKLVIVKCPLLSEIQGLGEMKQSLLHLEVSCCD RLSEMDGLESLEALESLTLESTSLSPDISDPLSMLTLKEDEDIPLDFHQYLDPRGPFPDLSRLQNLKQLRVAGWRLFPKFIELGRLKSLQSLELKACKSL KRLSILSRIEYLETLDVSGCIRLVEVPGLDRLGSLRKLNMSNCWSLEELPNLSGLKSLHVLDVSGCFNLVGVIGLEKLESLRELNMGHCRSIKELPDMSR LKNLLRLNLKGCTNLKNVKGLTKLKSLWFVRMEKRLLVKHPLQMAVWAGRELGQSPFIILPLLLVSFKVVRHWIKAGASDPFYNPVNDYVILPTAFEIET HKEKGPQFTSLKEEWEIVSGDQDDYVILPTAFEIETHKEKGLQFTSLKEEWEIVSGDQDEHDGMDGSKPVVSSMIQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	0	1
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004833 [exp]	2.6	0.7898
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	2.8	0.8054
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	3.5	0.8242
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	4.2	0.7768
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	5.3	0.7661
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	5.7	0.8209
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	7.9	0.8058
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	9.2	0.7534
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	9.4	0.7686
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10000782 [exp]	9.7	0.8004

Compare expression of checked genes

Lus10018308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.