Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 241 / 2e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 224 / 3e-64 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 220 / 5e-63 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G31540 216 / 1e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46260 217 / 6e-62 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 215 / 2e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 212 / 7e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46490 212 / 7e-61 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 213 / 1e-60 transmembrane receptors;ATP binding (.1.2) AT1G66090 202 / 2e-60 Disease resistance protein (TIR-NBS class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017143 [exp] 763 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10037406 [exp] 685 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 668 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004115 [exp] 657 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042714 [exp] 653 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 618 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 595 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010574 [exp] 546 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020534 [exp] 534 / 8e-180 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019710 [exp] 282 / 7e-90 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 287 / 2e-87 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 275 / 2e-87 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 285 / 1e-86 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 283 / 2e-86 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 271 / 6e-86 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 280 / 1e-84 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 271 / 1e-84 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 278 / 5e-84 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G084333 [exp] 265 / 5e-84 AT5G36930 347 / 2e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018309 pacid=23179329 polypeptide=Lus10018309 locus=Lus10018309.g ID=Lus10018309.BGIv1.0 annot-version=v1.0 ATGGAGAAAATGAACATGTGGTCCGGTGAAGGAACAATAGTCTCCAATTCTTCTTCAGAATCACAAACATCAACAGCAGAACTGCAATCTGTTGTCAGTG CTTTGGAGTACGAGGTTTTCTTGAGCTTTAGAGGGCCTGATGTTCGCAAAAGCTTTGCGGACTTTCTGTACAGCTATTTGGTCCGTTCCAAGATCCGCAC CTTTAGGGATGAGGAAGAGCTTCAGAAGGGGGAGACTATTGCACCTTCTCTGATCCAGGCTATCATGGAATCAAAGATTTACATTCCAATTTTATCAAAG AGCTATGCTTCTAGCAAATGGTGCCTCCAGGAACTAGCTAAGATGGTTGAGTGTTGCAGGAAAGGCAAGGAACACATCATAGTGCCCATTTTCTATTTCA TGGACCCTAGAGATGTCCGACATCAAGCGGGGCCTTACGATGATGCATTTGAACAACATAGTAAGAAACATGACGCTGCAACCATACACGAATGGCGGAC AGCTCTCCAAGAAGTTGGACAAATGAAAGGATGGCATGTTACCGAAATAGACGGACAGGGTGCTGTAATAGATGAACTTTTTTCTAAGGTTGAGTTGCAT CTGAGGAGTAACTACACTTTAGTGACTGAGGAGTTGGTTGGCATTGATTCTCATGTGCAAGAAGTGACGAGATTGTTGAATTTAGACTCTAGAGATGAGA AAATTGTTGGGATTCAAGGTATTGGCGGCATGGGTAAAACTACTATAGCCAAAGCAGTGTACGACAATATCTGCAGAAACTTCAATCGCTGCTGTTTCTT AGAGAATACACGAGAACTATTGTTGAAAAACAATGGTATTGTGTCTTTACAGAATAAGTTCATCTCTAGTATTTTGAGGGATGATGTTCATGTTAGAGAT GCTAGTGAAGGGGTCAACATGATTAGAGAGAGGGTCTGCAAATATAAAGTCTTAGTTGTTCTTGATGATGTGGATGATAAGTTTGAATTCGACCAAATAC TAGGAAAGTTAGGACATTTTTCCTCAGAAAGTAGATTCATCATTACAACAAGAGATAAAAGAGTACTAGAGCTCCTTCCAGAATGCAAACTGTATGAACC CAAAGAAATGAGTTATGATCATTCTGTTCAACTGTTTAGCAGACATGCCTTTGGGAGGAGGCATTACATTCCGGAAGGTTATGGTGCTCTATGCGATGAA TTTGTAAAAGTTGCAGTAAAACTTCCTTTGGCTCTTAAGGTTATAGGATCTCTCTTGTTCCGTAGGGATAAACAATTTTGA
AA sequence Show only first row Show all	>Lus10018309 pacid=23179329 polypeptide=Lus10018309 locus=Lus10018309.g ID=Lus10018309.BGIv1.0 annot-version=v1.0 MEKMNMWSGEGTIVSNSSSESQTSTAELQSVVSALEYEVFLSFRGPDVRKSFADFLYSYLVRSKIRTFRDEEELQKGETIAPSLIQAIMESKIYIPILSK SYASSKWCLQELAKMVECCRKGKEHIIVPIFYFMDPRDVRHQAGPYDDAFEQHSKKHDAATIHEWRTALQEVGQMKGWHVTEIDGQGAVIDELFSKVELH LRSNYTLVTEELVGIDSHVQEVTRLLNLDSRDEKIVGIQGIGGMGKTTIAKAVYDNICRNFNRCCFLENTRELLLKNNGIVSLQNKFISSILRDDVHVRD ASEGVNMIRERVCKYKVLVVLDDVDDKFEFDQILGKLGHFSSESRFIITTRDKRVLELLPECKLYEPKEMSYDHSVQLFSRHAFGRRHYIPEGYGALCDE FVKVAVKLPLALKVIGSLLFRRDKQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	1.0	0.9195
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10020643 [exp]	2.0	0.8800
AT5G23510			unknown protein		Lus10029154 [exp]	3.5	0.8698
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	6.0	0.8619
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	6.0	0.8230
					Lus10008289 [exp]	14.1	0.8734
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004833 [exp]	21.3	0.7762
					Lus10016821 [exp]	22.0	0.8337
AT1G24620			EF hand calcium-binding protei...		Lus10029660 [exp]	22.4	0.7501
					Lus10035062 [exp]	22.7	0.8640

Compare expression of checked genes

Lus10018309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.