Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12800 395 / 3e-139 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G07640 184 / 3e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 113 / 4e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 102 / 3e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 101 / 3e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 101 / 4e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 100 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 99 / 4e-24 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT1G54870 99 / 8e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 97 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017129 [exp] 603 / 0 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10031746 [exp] 422 / 6e-150 AT3G12800 463 / 4e-166 short-chain dehydrogenase-reductase B (.1) Lus10031170 [exp] 421 / 3e-149 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1) Lus10001560 [exp] 113 / 2e-28 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 108 / 1e-27 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 108 / 1e-27 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 108 / 1e-27 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029937 [exp] 107 / 3e-27 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 107 / 4e-27 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125900 [exp] 486 / 2e-175 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.006G025400 [exp] 397 / 6e-140 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.010G142600 [exp] 112 / 4e-29 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 111 / 1e-28 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 108 / 7e-28 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 108 / 1e-27 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 108 / 1e-27 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G149201 [exp] 108 / 2e-27 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 101 / 1e-24 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 100 / 3e-24 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10018323 pacid=23179367 polypeptide=Lus10018323 locus=Lus10018323.g ID=Lus10018323.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAGTCACCGTTCAGACCGGAGATACTCAAAGGCAAGGTGGCTTTGCTAACCGGCGGCGCTTCAGGGATCGGCTACGGAATATCCCTCGAGC TAGGCAAACATGGCGCCTCAGTCGCCGTCATGGGCCGCCGGAAACACGTCGTCGACTCCGCCGTATCGTCTCTCCAATCCCTCGGCATCCCCGCGATTGG ATTCGAGGGAGACGTTCGGAAGAGAGAGGACGCAGCTAGGGCGGTTGAAGGGACGGCGAAGCATTTCGGGAGACTTGATATCCTGGTAAACGCCGCAGCT GGGAATTTCCTCACTCCGGCGGAACATCTATCGCCTAATGGCTTCAAAACAGTGATGGACATCGACTCGGTGGGAACATTCACGATGTGTCACGAGGCAC TGAAGTATCTGAAGAAAGGTGGCGAAGGTAAAGACCCAGCTGAAGTTGGTGGAACCATTATCAACATTAGCGCAACTCTGCATTACACTGCTACTTGGTA CCAAATCCACGTCTCTGCTGCAAAGGCAGCAGTGGATAGCATAACAAGGAGTCTGGCATTAGAGTGGGGGACAGACTACGACATAAGAGTGAACGGGATC GCGCCAGGACCGATTCAGGACACTGCTGGTGCTAGCAAGCTTGTCGGGTTTGACGAAGAGCTGGTTAAGAAAACTCTAGGGGCGGACCCTCTGTTTCGGT ATGGGGACAAGTGGGATATCGCGATGGCTGTCCTCTACCTAGTGTCGGATGCAGGGAAGTTCGTGAACGGGACAACAATGGCAGTAGATGGAGGGCAGTG GCTGAGCAAGCCTCGCCACATTGGGAAAGAAGAAGTGAAGCTGATATCGAAAGTTGTAGAGAGAAGGTCCAGAGATGCAGCAGTCGGGGTCCCTAAGAGC AAGCTGTGA
AA sequence Show only first row Show all	>Lus10018323 pacid=23179367 polypeptide=Lus10018323 locus=Lus10018323.g ID=Lus10018323.BGIv1.0 annot-version=v1.0 MAAESPFRPEILKGKVALLTGGASGIGYGISLELGKHGASVAVMGRRKHVVDSAVSSLQSLGIPAIGFEGDVRKREDAARAVEGTAKHFGRLDILVNAAA GNFLTPAEHLSPNGFKTVMDIDSVGTFTMCHEALKYLKKGGEGKDPAEVGGTIINISATLHYTATWYQIHVSAAKAAVDSITRSLALEWGTDYDIRVNGI APGPIQDTAGASKLVGFDEELVKKTLGADPLFRYGDKWDIAMAVLYLVSDAGKFVNGTTMAVDGGQWLSKPRHIGKEEVKLISKVVERRSRDAAVGVPKS KL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	0	1
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	1.0	0.8483
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	2.0	0.7980
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	5.7	0.7957
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	6.7	0.7936
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	14.1	0.7649
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	14.5	0.7481
AT1G02070			unknown protein		Lus10015899 [exp]	16.4	0.7927
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	17.5	0.7850
AT1G56423			unknown protein		Lus10010918 [exp]	19.6	0.7765
AT1G01770			unknown protein		Lus10014782 [exp]	20.8	0.7679

Compare expression of checked genes

Lus10018323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.