Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 1123 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 1093 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 996 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT3G02050 618 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT1G60160 617 / 0 Potassium transporter family protein (.1) AT2G40540 609 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 603 / 0 Potassium transporter family protein (.1) AT1G70300 602 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT4G13420 582 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G30070 579 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038361 [exp] 1187 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 1179 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 627 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 620 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 605 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10012993 [exp] 598 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10036160 [exp] 577 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10027004 [exp] 577 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10003402 [exp] 576 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123800 [exp] 1200 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 1180 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123700 [exp] 1054 / 0 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109800 [exp] 1024 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 675 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 657 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.010G094400 [exp] 620 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.009G073500 [exp] 620 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.010G094300 [exp] 612 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.019G056500 [exp] 612 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10018324 pacid=23179307 polypeptide=Lus10018324 locus=Lus10018324.g ID=Lus10018324.BGIv1.0 annot-version=v1.0 ATGGACTTGGATCGTAGAAATGATGAGGATGGAGATAGCGACTCCAACAAAGGAAGTATGTGGGATTTGGAGCAGAAGCTTGATCAGCCAATGGATGATG AAGCTGGAAAGCTCAAAAACATGCTCAGAGAAAAGAAATACTCAACACTTTTGCTTCTACGGCTGGCATTCCAAAGTCTTGGAGTTGTGTACGGAGACTT AGGCACTTCTCCATTATATGTGTTCTACAATACTTTTCCCAAGGGAATCAATGATCCGGAGGATGTGATTGGAGCTCTTTCGTTGATAATATACTCCCTT ACTCTTATCCCTCTCCTCAAGTATGTCTTTATCGTCTGCAAAGCTAACGACAACGGGCAAGGTGGTACTTTGGCTCTGTACTCGCTACTTTGTCGACATG CGAACGTGAAGACTATTCCGAATCAACACCGCACGGATGAGGATCTAACAACGTATAGTCGCTCTACCTTCCATGAACATTCTTTTGCTGCTAAAACAAA GCGATGGTTTGAGGGACATGGATCACGGAAGACTTCTCTTCTTATTCTTGTTCTTGTTGGCACTTGTATGGTGATTGGTGACGGAATCCTCACTCCCGCG ATTTCTGTTATTCAGTCTTTGTCGAATCAACCGTTTCTTGCAGTTCTATCCGCAGTTGGTGGGATCAAGGTGAACAGCCCCGGAATGAGTGGTGATGTAG TCATAGTGGTTGCAGTTGTTATCTTAGTATGTTTCTTCAGCATGCAACATTATGGGACCGATAAAGTCGGTTGGCTATTTGCTCCGATTGTCCTGCTTTG GTTTCTGTTAATTGGAGGAATCGGTATATACAACATCTGCAAGTACGACAGAAGGATACTTAGAGCTTTCTCACCTGTATATATTTACCAGTATCTTAAA AGGGGAGGCAAAGATGGCTTTGTGTCCCTTGGCGGCATTATGCTTAGTATTACAGGAACCGAAGCACTGTTTGCTGATCTAGCCCATTTCCCTGTACCGG CAATTCAAATCGCGTTCACGGTAGTCGTTTTCCCTTGCCTTCTTCTTGCATATTCTGGTCAAGCTGCTTATCTTGTGAAGAACACGGATCATGTGAAGGA TGCATTTTACCGCTCCATTCCAGAGAGTATATATTGGCCTGTGTTTCTAGTTGCTACTGCAGCTGCTATTGTTGCTAGTCAGGCCACAATCTCCGCGACT TTTTCGATCATCAAGCAGGCACATGCTCATGGATGCTTCCCAAGAGTCAAAGTTGTGCACACATCAAAGAAGTTCCTTGGCCAGATATATGTTCCGGATA TCAATTGGATCCTTATGATTCTCTGCATTTGTGTTACTGCTGGGTTCAGGAAGCAGAGCCAAATTGGAAATGCTTATGGAACAGCAGTGGTCCTAGTGAT GCTGGTCACGACCCTCCTCATGGTCCTCGTAATGATCCTCGTATGGCGCTCCCACTGGGTCCTCGTCGTGATCTTCACCATCTTATCCCTCGTTGTCGAA TGCACCTACTTCTCGGCCGTCCTGTTCAAGGTCGACCAGGGCGGTTGGGTCCCCCTCGTCATAGCCGGAGCATTCCTCATCGTCATGTGCGTCTGGCACT ACGGAACAGTCAAACGTTACGAGTTCGAAATGCACAGCAAAGTCTCGTTGGCGTGGATCGTAGGACTTGGACCGAGTCTAGGCCTCGTTAGGGTTCCTGG GATCGGCCTGGTCTACACCGAGCTCGCCAGTGGGGTCCCGCACATCTTCTCCCATTTCATCGTCAACCTCCCCGCAATCCACTCCGTCGTGGTTTTCGTG TGCGTCAAGTATCTCCCGGTCTACACAGTCCCCGAGGAGGAGAGGTTCCTCGTCAAAAGAATCGGCCCCAAGAACTTCAGAATGTTCCGGTGCGTGGCTA GGTATGGATACAAGGACCTCCACAAGAAAGACGACGACTTCGAAACCAAGCTGTTCGACAGCCTTTATTTATTCGTCAGGCTCGAGTCGATGATGGAAGG GTGTTCAGACTCGGACGATTACAGCCTCTACGAGCAAGAGACGAATGACAATCAAAACGATCACTTGATAGCGGACCCTACAACCGTGTCATCGTCCATC GACTCGATCGTGTCGGTGAAGTCTTCAGTGGTGGTGGACCGGTACGTGACATTCGGGGGTTCGTCTTCGGGTGCCGGGCAGTTGGTGGAGGTGGATGAGG TGGAGTTTCTGAAGAGCTGTAAAGATGCTGGAGTTGTACATATAATGGGGAATACGGTGGTGAGAGCTAGGAGGGAGTCGAGGTTTTATAAGAAGATAGC TGTGGATTACATTTATGCTTTCCTTAGGAAGATTTGCAGAGAGCACAGTGTGATCTTTAATGTTCCTCATGAGAGTCTGTTGAACGTTGGACAGGTTTTC TACGTGTAA
AA sequence Show only first row Show all	>Lus10018324 pacid=23179307 polypeptide=Lus10018324 locus=Lus10018324.g ID=Lus10018324.BGIv1.0 annot-version=v1.0 MDLDRRNDEDGDSDSNKGSMWDLEQKLDQPMDDEAGKLKNMLREKKYSTLLLLRLAFQSLGVVYGDLGTSPLYVFYNTFPKGINDPEDVIGALSLIIYSL TLIPLLKYVFIVCKANDNGQGGTLALYSLLCRHANVKTIPNQHRTDEDLTTYSRSTFHEHSFAAKTKRWFEGHGSRKTSLLILVLVGTCMVIGDGILTPA ISVIQSLSNQPFLAVLSAVGGIKVNSPGMSGDVVIVVAVVILVCFFSMQHYGTDKVGWLFAPIVLLWFLLIGGIGIYNICKYDRRILRAFSPVYIYQYLK RGGKDGFVSLGGIMLSITGTEALFADLAHFPVPAIQIAFTVVVFPCLLLAYSGQAAYLVKNTDHVKDAFYRSIPESIYWPVFLVATAAAIVASQATISAT FSIIKQAHAHGCFPRVKVVHTSKKFLGQIYVPDINWILMILCICVTAGFRKQSQIGNAYGTAVVLVMLVTTLLMVLVMILVWRSHWVLVVIFTILSLVVE CTYFSAVLFKVDQGGWVPLVIAGAFLIVMCVWHYGTVKRYEFEMHSKVSLAWIVGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFIVNLPAIHSVVVFV CVKYLPVYTVPEEERFLVKRIGPKNFRMFRCVARYGYKDLHKKDDDFETKLFDSLYLFVRLESMMEGCSDSDDYSLYEQETNDNQNDHLIADPTTVSSSI DSIVSVKSSVVVDRYVTFGGSSSGAGQLVEVDEVEFLKSCKDAGVVHIMGNTVVRARRESRFYKKIAVDYIYAFLRKICREHSVIFNVPHESLLNVGQVF YV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	0	1
AT3G07550			RNI-like superfamily protein (...		Lus10036412 [exp]	2.0	0.8954
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	9.2	0.9125
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	11.0	0.8773
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	13.6	0.8870
AT1G65320			Cystathionine beta-synthase (C...		Lus10011457 [exp]	15.9	0.8602
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10021659 [exp]	17.1	0.8856
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	20.6	0.8942
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	23.0	0.8608
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	23.2	0.8553
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	24.4	0.8700

Compare expression of checked genes

Lus10018324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.