Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17430 597 / 0 Nucleotide-sugar transporter family protein (.1) AT1G48230 571 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 302 / 6e-101 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G11230 295 / 8e-98 Nucleotide-sugar transporter family protein (.1) AT4G32390 294 / 1e-97 Nucleotide-sugar transporter family protein (.1) AT5G25400 291 / 3e-96 Nucleotide-sugar transporter family protein (.1) AT2G25520 290 / 6e-96 Drug/metabolite transporter superfamily protein (.1) AT3G14410 285 / 4e-94 Nucleotide/sugar transporter family protein (.1) AT1G21870 111 / 1e-27 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 107 / 2e-26 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017115 [exp] 729 / 0 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 306 / 4e-102 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 305 / 1e-101 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 281 / 2e-92 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10025645 [exp] 111 / 2e-27 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10028255 [exp] 103 / 5e-25 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042700 [exp] 103 / 1e-24 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10016446 [exp] 102 / 2e-24 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 101 / 3e-24 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001700 [exp] 601 / 0 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 590 / 0 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 306 / 3e-102 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.018G028900 [exp] 296 / 3e-98 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G252500 [exp] 286 / 3e-94 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 107 / 7e-26 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.010G194100 [exp] 101 / 4e-24 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 101 / 8e-24 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.016G043200 [exp] 95 / 6e-22 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 96 / 9e-22 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10018339 pacid=23179339 polypeptide=Lus10018339 locus=Lus10018339.g ID=Lus10018339.BGIv1.0 annot-version=v1.0 ATGGTGATGATAAGCAAGTCTCTCGTCTTCACATACTTCTACCTCCTGATCTACATCATCCTCTCTTCCGGAGTCATTCTTTACAACAAGTGGGTTCTTT CGCCCAAGTATTTCAACTTTCCGTTCCCCATCACTCTAACTATGATTCACATGGCTTTCTCCGGCCTCGTTTCTTTCTTCCTCGTCCGTGTTTTCAAGGT TGTGACTCCTGTGAAAATGACTTTTGAAATCTATGCCACTTGTGTCATACCCATTAGCGCCTTCTTCGCTGCTAGTCTCTGGTTTGGTAACACTGCGTAC TTGTATATTTCAGTGGCTTTCATCCAAATGCTTAAGGCTTTGATGCCAGTGGCAACTTTTATCATGGCTGTACTGTGTGGCACGGATAAAGCAAGGTGTG ACGTGTTCTTGAACATGTTGCTGGTCAGTGTTGGAGTTGTCGTTTCCTCATATGGGGAAATCCATTTTAATGTGGTTGGCACAGTTTACCAGGTTACCGG CATCTTTGCTGAAGCTCTTAGGCTAGTGTTAACTCAAGTTCTTCTACAGAAGAAGGGCTTGTCCCTGAACCCTATCACCAGCTTATATTACATAGCTCCA TGCAGCTTCGTATTTCTCTTTGCGCCTTGGTATTTACTAGAGAAACCAGCAATGGAAGTATCACAGATTCAGTTCAATTTCTGGATTTTCTTCTCGAATG CACTTTGTGCACTAGCATTGAACTTCTCGATATTCCTGGTTATTGGAAGAACTGGAGCAGTGACCATCAGGGTTGCTGGTGTGCTCAAAGACTGGATACT TATAGCCCTTTCAACTGTCATATTCCCGGAGTCTACCATAACTGGGCTGAACATAACCGGTTATGCGATCGCTCTCTGTGGTGTGGTAATGTACAACTAC TTGAAGGTTAGGGATGTTCGTGCATCGTCGCAACTCCCTGAAACTGCTCCCGACAGATTGACAAAGGATTGGAAACTGGAGAAGAAGTCATCCGATATAT TTGTGCCTAATGATGGCAGTGGAGGAGTAGCAGCAGCAAATGTCTTATCATCCTCTGATGGGTTGGGTGTGGATGAGGAAGTACCTCTAATAGCATCGTC GAGATTGTCTCATATTGGACGTTCCCAGTCTAGTAACCACAATGTAGGATGA
AA sequence Show only first row Show all	>Lus10018339 pacid=23179339 polypeptide=Lus10018339 locus=Lus10018339.g ID=Lus10018339.BGIv1.0 annot-version=v1.0 MVMISKSLVFTYFYLLIYIILSSGVILYNKWVLSPKYFNFPFPITLTMIHMAFSGLVSFFLVRVFKVVTPVKMTFEIYATCVIPISAFFAASLWFGNTAY LYISVAFIQMLKALMPVATFIMAVLCGTDKARCDVFLNMLLVSVGVVVSSYGEIHFNVVGTVYQVTGIFAEALRLVLTQVLLQKKGLSLNPITSLYYIAP CSFVFLFAPWYLLEKPAMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNITGYAIALCGVVMYNY LKVRDVRASSQLPETAPDRLTKDWKLEKKSSDIFVPNDGSGGVAAANVLSSSDGLGVDEEVPLIASSRLSHIGRSQSSNHNVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	0	1
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	2.0	0.7668
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	2.6	0.7482
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	4.5	0.7580
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	6.0	0.7617
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	9.2	0.7655
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	13.6	0.7045
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	15.7	0.7455
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	16.6	0.7676
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	17.0	0.7040
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	20.7	0.7289

Compare expression of checked genes

Lus10018339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.