Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61800 540 / 0 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 513 / 0 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G17630 307 / 1e-101 Nucleotide/sugar transporter family protein (.1) AT4G03950 258 / 2e-84 Nucleotide/sugar transporter family protein (.1) AT5G46110 225 / 6e-70 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT3G01550 198 / 6e-60 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 192 / 3e-57 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT1G21870 90 / 5e-20 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 90 / 6e-20 EamA-like transporter family protein (.1) AT1G12500 76 / 7e-15 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007653 [exp] 661 / 0 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10011155 [exp] 529 / 0 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 524 / 0 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10019209 [exp] 286 / 8e-94 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10004312 [exp] 283 / 1e-92 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10037085 [exp] 233 / 9e-73 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 229 / 2e-71 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013978 [exp] 228 / 4e-71 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013083 [exp] 211 / 9e-65 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019900 [exp] 538 / 0 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 533 / 0 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.001G420200 [exp] 531 / 0 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.013G071900 [exp] 293 / 9e-96 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.008G095200 [exp] 236 / 4e-74 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 221 / 1e-69 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 221 / 1e-68 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.001G347300 [exp] 207 / 5e-63 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 199 / 6e-60 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 195 / 2e-58 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10018356 pacid=23162112 polypeptide=Lus10018356 locus=Lus10018356.g ID=Lus10018356.BGIv1.0 annot-version=v1.0 ATGACAACCACAATGTTCTCTTCCACTTCAATCCATCGAACTCATCACTCCATTTCCAAACTCTCCATCCCCAAATCCCATCTTCCTCCAACCATCTTCC ATTTCTCAAAAACCTCCATCCTCAAACCCCTCCACCTCTCCAATCCCGCCGTCAACCGCACCACCCTCGTCTGCAAAGCCTACGAGGCCGACAACCGGTC GCAACCGCTGGACATAACATTCAACGACCAGTCCGCTCAGAAGATCAAGATCGGGGTATACTTCGCCACGTGGTGGGCGCTCAACGTCGTCTTCAACATC TACAACAAGAAAGTGCTGAACGCGTTCCCTTACCCGTGGCTCACTTCGCTTCTCTCCTTGGCATGTGGGTCCCTCATGATGCTCGTCTCATGGGCCACCC GCGTCGCCCCAGCGCCTGCCGTTGATTTTGAATTTTGGAAATCGTTATTCCCCGTCGCGGTGGCGCACACCATCGGACACGTGGCGGCGACTGTCAGCAT GTCGAAAGTGGCCGTCTCGTTCACTCATATAATCAAGAGCGGGGAGCCGGCTTTCAGTGTTTTGGTGTCCAGGTTTCTGTTGGGAGAGAGTTTTCCACTT CCGGTTTACCTCTCTCTGTTGCCGATCATCGGAGGGTGCTCTCTGGCCGCCGTCACTGAGCTCAACTTTAACCTCATCGGATTCATGGGAGCGATGATCT CAAACATGGCGTTCGTGTTCCGTAACATATTCTCAAAGAAAGGAATGAGCAGCAGCGGGGGGAAGAAGAACGCCGTCAGCGGGATGAACTACTATGCCTG CTTGTCGATCATGTCACTACTAATTCTGACCCCGTTCGCCGTCGCCGTGGAGGGACCTAAGATGTGGGCCGCCGGGTGGAGAACCGCCGTGGCGGAAATC GGGCCGAATTTCGTGTGGTGGGTGGCGGCGCAGAGCGTGTTCTACCATTTGTACAACCAGGTGTCCTACATGTCGCTGGATCAGATATCGCCGTTGACGT TCAGCGTTGGTAACACCATGAAGAGGATCTCGGTGATCGTCTCATCGATCATTATATTCCACACGCCGATTCAGCCAGTGAATTCCCTCGGAGCCGCCAT TGCTATCCTCGGCACTTTCATCTATTCGCAGGCAAAGCTGTGA
AA sequence Show only first row Show all	>Lus10018356 pacid=23162112 polypeptide=Lus10018356 locus=Lus10018356.g ID=Lus10018356.BGIv1.0 annot-version=v1.0 MTTTMFSSTSIHRTHHSISKLSIPKSHLPPTIFHFSKTSILKPLHLSNPAVNRTTLVCKAYEADNRSQPLDITFNDQSAQKIKIGVYFATWWALNVVFNI YNKKVLNAFPYPWLTSLLSLACGSLMMLVSWATRVAPAPAVDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGESFPL PVYLSLLPIIGGCSLAAVTELNFNLIGFMGAMISNMAFVFRNIFSKKGMSSSGGKKNAVSGMNYYACLSIMSLLILTPFAVAVEGPKMWAAGWRTAVAEI GPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFHTPIQPVNSLGAAIAILGTFIYSQAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10018356 [exp]	0	1
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	1.7	0.8583
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	3.5	0.8152
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Lus10042504 [exp]	7.0	0.7751
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	11.8	0.7777
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	16.6	0.7827
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	17.9	0.7773
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	22.2	0.7753
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10013814 [exp]	24.4	0.7456
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	25.1	0.7709
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	28.8	0.7148

Compare expression of checked genes

Lus10018356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.