Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46410 67 / 1e-15 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT1G01380 66 / 4e-15 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) AT4G01060 62 / 1e-13 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) AT1G66370 65 / 2e-13 MYB ATMYB113 myb domain protein 113 (.1) AT5G35550 64 / 4e-13 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT5G53200 61 / 4e-13 MYB TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1) AT3G13540 63 / 6e-13 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G09460 62 / 9e-13 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G40330 62 / 1e-12 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT2G30424 59 / 2e-12 MYB TCL2 TRICHOMELESS 2, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007643 [exp] 151 / 4e-49 AT2G46410 65 / 3e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10018414 [exp] 125 / 6e-35 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10009130 [exp] 67 / 3e-14 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10001043 [exp] 64 / 7e-14 AT1G22640 119 / 1e-33 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10028513 [exp] 66 / 1e-13 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10014933 [exp] 62 / 1e-13 AT2G46410 96 / 1e-27 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10042522 [exp] 65 / 2e-13 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10038822 [exp] 61 / 2e-13 AT5G53200 96 / 1e-27 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Lus10038092 [exp] 64 / 4e-13 AT5G52600 185 / 1e-58 myb domain protein 82 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G021300 [exp] 89 / 2e-24 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.011G026300 [exp] 88 / 3e-24 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.007G122800 [exp] 84 / 3e-22 AT2G46410 69 / 3e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G037000 [exp] 82 / 7e-22 AT2G46410 69 / 4e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.004G015100 [exp] 73 / 3e-18 AT2G46410 71 / 1e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G125700 [exp] 67 / 3e-14 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.006G221500 [exp] 67 / 4e-14 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.017G126000 [exp] 67 / 5e-14 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.006G066400 [exp] 65 / 9e-14 AT5G52600 193 / 3e-62 myb domain protein 82 (.1) Potri.018G005300 [exp] 66 / 1e-13 AT1G22640 186 / 9e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018366 pacid=23162197 polypeptide=Lus10018366 locus=Lus10018366.g ID=Lus10018366.BGIv1.0 annot-version=v1.0 ATGGAAGTTTGTGGTTTTTCAAGTTTGTTTGTGTCAGTCTCTTGGGTTAGCCTTAATGGTTTTCCTCTTAAGTTTGTTGTGTCTGTGGGGTTAGCCTCAA TGGTTTTCCTCGGAAAGATCATGGATGAGTCTTCCTGCAGGCATTCTTCTGGTAGTGGCGAACTCGGGTCACCACAGAAGGAGGTTAAGTTCTCGGATGA TGAGGAGTCGCTGGTGATCAGGATGTATAATCTTGTTGGAGAAAGGTGGCATTTGATCGCTGGAAGGATTCCGGGAAGAACAGCTCAGGATGTCAAGAAG TACTGGAATTCGAGACGCAGTGCGAGTGAAGAACATACTCCTCCACAGGCGAACAAAACATGA
AA sequence Show only first row Show all	>Lus10018366 pacid=23162197 polypeptide=Lus10018366 locus=Lus10018366.g ID=Lus10018366.BGIv1.0 annot-version=v1.0 MEVCGFSSLFVSVSWVSLNGFPLKFVVSVGLASMVFLGKIMDESSCRHSSGSGELGSPQKEVKFSDDEESLVIRMYNLVGERWHLIAGRIPGRTAQDVKK YWNSRRSASEEHTPPQANKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	0	1
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	1.0	0.9106
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	3.5	0.8487
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	3.9	0.8660
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	3.9	0.8312
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	6.5	0.8365
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	6.5	0.8672
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	8.7	0.8423
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	10.2	0.8334
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	11.4	0.8359
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	12.4	0.8264

Compare expression of checked genes

Lus10018366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.