Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 469 / 2e-163 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05110 461 / 2e-160 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05140 440 / 7e-152 Nucleoside transporter family protein (.1) AT4G05130 436 / 3e-150 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 390 / 2e-132 ATENT7 equilibrative nucleoside transporter 7 (.1) AT3G09990 373 / 8e-126 Nucleoside transporter family protein (.1) AT1G70330 125 / 6e-31 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 122 / 1e-30 Nucleoside transporter family protein (.1.2) AT2G46410 72 / 3e-15 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT1G01380 70 / 6e-15 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002589 [exp] 527 / 0 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018413 [exp] 522 / 0 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 451 / 2e-156 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 450 / 5e-156 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 391 / 4e-133 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018366 [exp] 128 / 3e-35 AT2G46410 67 / 2e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10002590 [exp] 120 / 6e-33 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1) Lus10007643 [exp] 119 / 3e-32 AT2G46410 65 / 3e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10030104 [exp] 123 / 1e-30 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032400 [exp] 498 / 1e-174 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 483 / 5e-169 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 468 / 5e-163 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 460 / 1e-159 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 444 / 1e-153 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 119 / 3e-29 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.006G068100 [exp] 111 / 2e-26 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130000 [exp] 102 / 2e-23 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.004G021300 [exp] 90 / 5e-22 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.011G026300 [exp] 86 / 1e-20 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018414 pacid=23162166 polypeptide=Lus10018414 locus=Lus10018414.g ID=Lus10018414.BGIv1.0 annot-version=v1.0 ATGTCACAAATTGTGGACGGTGGTAGAGTTGTCGTCGATGGAGGTGAAGTCGACCCAACAACTAGACTCGAGGGGAAGTACAAGGCAGTGATTGTGTGTT GGATCCTTGGATTTGGAGGGATTATTGCTTGGAATGCCATGGTAACCATCGAAGATTACTACTACACTTTGTTCCCTGAATACCACCCATCAAGAGTTCT AACCATGATCTACCAACCCTTTGCTCTCGGAGCAATGGCCATTTGCACCTACTACGAGTCGAAAATGGACACTAGGAAGCGCAACATAGCTGGATACTCG ATGATCTTCGTCAGCACGTCGATGCTCCTCGTTTTGGATTTGGCCACATCAGGAAGTGGTGGGATCGGACCGTTCATAGGAATCTGTGGTGTTGTCGGCG CCTTTGGCGTCTCGGATGTCCTTGTTCAAGGTGGAGTTGTCGGAGAGTTGTCTTTTATGTGCCCTGAATTTATTCAGTCCTACTATGGTGGGATGGCAGC ATGCGGAGCCATGACCTCGGGGTTAAGGTTGGTCACGAAAGCAACTTTCGAAAATGTCGATCATGGCCTTCGGAAGGGAGTTCTGATGTTTTTGGGGATC TCGATTTCTCTGGAGTTCTTATGCATTTTATTGTATGCATTTTACTTACCGAAACTTCCAATCATCAATTACTACCGCACGAAGGCGTCTAAGGAAGGTT CCAAAACCGTCTCAGCAGACCTTAAGGCCGCCGGTATACAAGTACCGACAACCCAAGGAGATGATGTCACACCGCCGGCGCGACTTAGCACGAAAGAGCT ACTAATCCACAACGTGGACTACTTTCTAGACTTGTACTTCACATACACGCTAACGTTGTCCATCTTCCCTGGATTCATCTCCGAGAACACCGGCACACAT GGAATGGGTACCTGGTACATATTGGTATTGATTGCAATGTACAACGCATGGGACCTAATAGGCCGATACGTCCCCATGGTTGAATGCATCAAGCTAAAAT CAAGAAAGGGGCTAATGATCGCGACAGTATCAAGGTTTTTACTAGTTCCAGCCTTCTATTTCGCGGCTAAGTACGCCGACAAAGGCTGGATGATCGCTCT CACTTCGTTTCTCGGGTTAACAACCGGGTACCTCACTGTCTGTGTCATGACCTTGGCTCCAAAGGGTTACAAGGGTCCGGAGCAGAATGCGTTGGGGAAT TTGCTAGTGTTGTTCTTATTAGCCGGTATTTTCACCGGAGTGGAAAAAGGAACCAACTCTCTTTCTTCCTCTTTGAAGATCATGGATGGCGAACTCAGGT CACCACAGAAGGAGGTTAAGTTCTCGGATGATGAGGAGTCGTTGGTGACCAGGATGTATAATCTTGTTGGAGAAAGGTGGCATTTGATCGCTGGAAGGAT TCCGGGAAGAACAGCTCAGGATGTCGAGAAGTACTGGAATTCGAGACGCAGTGCGAGTGAAGAACATACTCTTACACGGTCGTGTAACTCGTTTTACACG GCCATATAA
AA sequence Show only first row Show all	>Lus10018414 pacid=23162166 polypeptide=Lus10018414 locus=Lus10018414.g ID=Lus10018414.BGIv1.0 annot-version=v1.0 MSQIVDGGRVVVDGGEVDPTTRLEGKYKAVIVCWILGFGGIIAWNAMVTIEDYYYTLFPEYHPSRVLTMIYQPFALGAMAICTYYESKMDTRKRNIAGYS MIFVSTSMLLVLDLATSGSGGIGPFIGICGVVGAFGVSDVLVQGGVVGELSFMCPEFIQSYYGGMAACGAMTSGLRLVTKATFENVDHGLRKGVLMFLGI SISLEFLCILLYAFYLPKLPIINYYRTKASKEGSKTVSADLKAAGIQVPTTQGDDVTPPARLSTKELLIHNVDYFLDLYFTYTLTLSIFPGFISENTGTH GMGTWYILVLIAMYNAWDLIGRYVPMVECIKLKSRKGLMIATVSRFLLVPAFYFAAKYADKGWMIALTSFLGLTTGYLTVCVMTLAPKGYKGPEQNALGN LLVLFLLAGIFTGVEKGTNSLSSSLKIMDGELRSPQKEVKFSDDEESLVTRMYNLVGERWHLIAGRIPGRTAQDVEKYWNSRRSASEEHTLTRSCNSFYT AI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	4.2	1.0000
					Lus10003536 [exp]	7.1	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	7.3	1.0000
					Lus10023589 [exp]	7.9	1.0000
					Lus10011078 [exp]	8.7	1.0000
					Lus10012998 [exp]	9.5	1.0000
					Lus10028667 [exp]	10.4	1.0000
					Lus10011425 [exp]	11.2	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	11.5	1.0000
					Lus10027689 [exp]	13.4	1.0000

Compare expression of checked genes

Lus10018414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.