Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 288 / 9e-96 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 278 / 3e-92 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 256 / 4e-84 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 240 / 3e-77 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 237 / 3e-76 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 235 / 6e-75 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 228 / 9e-73 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G54230 224 / 3e-71 MYB ATMYB49 myb domain protein 49 (.1) AT5G10280 221 / 5e-70 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G17785 221 / 2e-69 MYB ATMYB39 myb domain protein 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002593 [exp] 509 / 0 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 277 / 7e-92 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 281 / 9e-92 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 250 / 1e-82 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10036472 [exp] 224 / 3e-71 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 224 / 3e-71 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10033003 [exp] 226 / 4e-71 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10014784 [exp] 218 / 3e-69 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 218 / 3e-69 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033100 [exp] 313 / 3e-105 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 306 / 1e-102 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 279 / 5e-92 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 261 / 3e-85 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 252 / 9e-82 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 244 / 8e-79 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 234 / 4e-75 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 232 / 5e-74 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 231 / 1e-73 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.002G096800 [exp] 226 / 7e-72 AT1G34670 305 / 2e-102 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018418 pacid=23162105 polypeptide=Lus10018418 locus=Lus10018418.g ID=Lus10018418.BGIv1.0 annot-version=v1.0 ATGGGAAGATCACCTTGTTGTGAGAAGAATGGCTTGAAGAAAGGTCCATGGACTTCCGAGGAAGATGAGAAGCTCATGGACTACATCCGCGACCACGGCT ATGGCAATTGGCGCACTCTCCCCAAGAATGCCGGGTTGCAAAGATGTGGCAAGAGCTGTCGCTTGAGGTGGACGAATTACCTTAGACCTGATATCAAGAG AGGTCGATTCTCGTCTGAAGAGGAAGAGGCCATCATCCAGCTGCATAGCGTTTTGGGGAACAAGTGGTCAGCGATTGCTGCTAGGTTACCAGGAAGGACT GACAACGAGATAAAAAATTATTGGAATACTCACATTAGAAAGAAGCTTTTGAGAATGGGAATCGACCCGGTGACTCACAGCCCTCGGCTCGATTTACTGG ACCTCTCGTCGATTTTGAGCTCTTCCTTCTCTTCTTCTTCCCATCTTATGAACTTTTCGGGTATGGTAGATGGGGTGGTCCAACCGTTAATCAACCCGGA AATCCTACGACTCGCCGCCTCCCTCTTCTCCACTTCACGAGGAGCAGCCCAACCCGAAAACCAAAATTTCATCTCGTCGAATCAATCATTGGTCCAACCG GTTGGACACGAGCTTCATCAAGAGCTGACTGCAACTACGACTATTACTACAAATATGCCATGTGGCCAATTCTCAGCCATAGACGCACAGTCCATGGTCC CCACGGATTGGCAGAGCAATTACACGGACGGATATGATCTTCATAATGGGGTACAACAACCGGGTCGTTACTACTACGGGTCGTCGCCGGATAATATTGT GGGTCCGTCAACGGAGAGTGGGTTTGGTATCCCGCCGGCGTCGGTTTTATCGACGCCGTCGTCGAGTCCGACCCCGTTGAATTCGAGCTCGACTTACAAT AATTGGAACAGCAGTACGGAGGACGAGAGAGATAGCTATAGTAGTGATGTGTTTCGGTTTGAAATTCCTGACTGTATTTTGGACGTTAGTAATTTCATGT AA
AA sequence Show only first row Show all	>Lus10018418 pacid=23162105 polypeptide=Lus10018418 locus=Lus10018418.g ID=Lus10018418.BGIv1.0 annot-version=v1.0 MGRSPCCEKNGLKKGPWTSEEDEKLMDYIRDHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSSEEEEAIIQLHSVLGNKWSAIAARLPGRT DNEIKNYWNTHIRKKLLRMGIDPVTHSPRLDLLDLSSILSSSFSSSSHLMNFSGMVDGVVQPLINPEILRLAASLFSTSRGAAQPENQNFISSNQSLVQP VGHELHQELTATTTITTNMPCGQFSAIDAQSMVPTDWQSNYTDGYDLHNGVQQPGRYYYGSSPDNIVGPSTESGFGIPPASVLSTPSSSPTPLNSSSTYN NWNSSTEDERDSYSSDVFRFEIPDCILDVSNFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018418 [exp]	0	1
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	1.0	0.8198
AT1G59970			Matrixin family protein (.1)		Lus10014512 [exp]	2.6	0.6923
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	7.5	0.7394
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	12.2	0.7100
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	27.5	0.6764
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	28.3	0.6693
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10005572 [exp]	29.9	0.7123
					Lus10034553 [exp]	31.4	0.6420
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000223 [exp]	76.7	0.6226
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10041801 [exp]	133.1	0.6104

Compare expression of checked genes

Lus10018418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.