Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61260 133 / 4e-35 Protein of unknown function (DUF761) (.1) AT5G54300 112 / 1e-27 Protein of unknown function (DUF761) (.1) AT1G11220 93 / 6e-21 Protein of unknown function (DUF761) (.1) AT1G11210 70 / 5e-13 Protein of unknown function (DUF761) (.1) AT1G11230 58 / 3e-09 Protein of unknown function (DUF761) (.1), Protein of unknown function (DUF761) (.2) AT4G04990 57 / 6e-09 Protein of unknown function (DUF761) (.1) AT5G48770 50 / 3e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72870 46 / 3e-05 Disease resistance protein (TIR-NBS class) (.1) AT5G46450 45 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12020 45 / 0.0002 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011239 [exp] 284 / 2e-92 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1) Lus10020090 [exp] 142 / 7e-38 AT1G61260 101 / 6e-24 Protein of unknown function (DUF761) (.1) Lus10011241 [exp] 91 / 4e-22 AT1G27170 68 / 2e-14 transmembrane receptors;ATP binding (.1.2) Lus10038482 [exp] 91 / 6e-19 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023329 [exp] 88 / 8e-19 AT5G36930 134 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023487 [exp] 81 / 6e-16 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 81 / 7e-16 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 76 / 2e-14 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10034697 [exp] 74 / 7e-14 AT5G36930 300 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044000 [exp] 181 / 9e-53 AT1G61260 227 / 7e-72 Protein of unknown function (DUF761) (.1) Potri.001G406600 [exp] 137 / 1e-36 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.011G126900 [exp] 128 / 2e-33 AT1G61260 182 / 1e-54 Protein of unknown function (DUF761) (.1) Potri.004G035700 [exp] 124 / 5e-32 AT1G61260 135 / 4e-37 Protein of unknown function (DUF761) (.1) Potri.012G037001 [exp] 80 / 1e-16 AT5G54300 70 / 9e-14 Protein of unknown function (DUF761) (.1) Potri.015G028700 [exp] 73 / 4e-14 AT1G61260 68 / 2e-12 Protein of unknown function (DUF761) (.1) Potri.015G043501 [exp] 54 / 1e-07 AT1G27170 534 / 5e-176 transmembrane receptors;ATP binding (.1.2) Potri.019G068200 [exp] 54 / 2e-07 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 53 / 4e-07 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.015G043600 [exp] 53 / 4e-07 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018444 pacid=23162188 polypeptide=Lus10018444 locus=Lus10018444.g ID=Lus10018444.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTCACCTTTTCCCTCCGTATTCTACTGATCTCCACCGGCGTCCTGTCTGGAGCTCTGCTCCTCAAAGCCTCTGTTCCATTGGTGCGAGACT TCTCTGTTTATCAAGCTCCCGTCCTCTGGAGCTCGATCTCCTCCTGGCTCAGGCCACCGTATCTCTACGTCATTATCAACTGCATAATCATCACCATCGC CGCCTCCTCGCGGTTCCACCACGGCGGAGGTGAGCAGCAGCAGGAAGAGGAGCAGAGCAGCAGCAGGAAGAGGAGGAGCACCGGCCGAAGGTGGAGGCGG TGGTGGTGGCGCCGTTGTCGCCGCCTCCGGCGGTGGATCGAGGTGGAGGATGCGGCGGTGGATTCAGTATTTGTGGATAAGGCTGTGACGGTGAGTAGCA TCGGTGGAGGTAGCTCTGCTGGTGAGGTTTTTGAACGGGATGACGATGAGGAGTTCGTGATCTCGAGATCTGCGTGGATTCCGCCGACGAAGAAGAGGAT TGAATCGTCGGAGAATCTGATGAAGGAGCTGCTCTCTCCAGCTGAGAAACCTCTCGTTTCTGCTCGATTCGCTGCAACTGAGAGACTTTCCAATTCCAAA GTCGGCGTTTCCTTACGAAATGACACAATTACCCTCCCTTTCCATTTTCTTCCCGTTGGGGGGATAATCTTAACTGATGTGGCAACTGCTGATTGGGCGA AAACAGGTGGGCGGAAGCTGAAGGTGTCGTCGAGGCCGAAGCGACACGACACGCTGGAGAACACGTGGAAGATGATAACGGAAGGGCGTCCGATGCCGTT AAATCGCCACCTCAAGAAATCCGACACGTGGGAGAATAACCACAGCCGTCAGATCGAGGCCGACGAATCATCACTCCTACTCGGCGCCAGTCCTCTGCCA CCGGCGGTGAAGAAGGCGGAGACGTTTAAGGACAGGACCAACTTCCAGCAGCTGCCCCCGGTGACTCCGGCGTCGGCGAAGCTGAAGAAGGAGCCGTCGC TGAGTCAGGACGAGCTGAACCGGCGGGTGGAGGCGTTTATCAATAAGTTCAACGAGGAGATGAGGATGCAGAGGCAGGAGTCGATAAACCGGTACAAGGA GATGGGATATATCATTGATGAAGTTTCTGCTACGGTATGGTCATGTCTGATGGAGAACTACAAGTTACCGACTGGCAAGTTGGTTGGAATGGATCCTCAT GTAGAACAAGTGAAGGGACGACTGAAGAAAGATGTGAGAACTGTTGGCATTCATGGTATGATTGGTATTGGTAAAACCACTATAGCCAGTGCAGTCTGTG ACAGTGTTGCTAATCAGTTTGATTGA
AA sequence Show only first row Show all	>Lus10018444 pacid=23162188 polypeptide=Lus10018444 locus=Lus10018444.g ID=Lus10018444.BGIv1.0 annot-version=v1.0 MASFTFSLRILLISTGVLSGALLLKASVPLVRDFSVYQAPVLWSSISSWLRPPYLYVIINCIIITIAASSRFHHGGGEQQQEEEQSSSRKRRSTGRRWRR WWWRRCRRLRRWIEVEDAAVDSVFVDKAVTVSSIGGGSSAGEVFERDDDEEFVISRSAWIPPTKKRIESSENLMKELLSPAEKPLVSARFAATERLSNSK VGVSLRNDTITLPFHFLPVGGIILTDVATADWAKTGGRKLKVSSRPKRHDTLENTWKMITEGRPMPLNRHLKKSDTWENNHSRQIEADESSLLLGASPLP PAVKKAETFKDRTNFQQLPPVTPASAKLKKEPSLSQDELNRRVEAFINKFNEEMRMQRQESINRYKEMGYIIDEVSATVWSCLMENYKLPTGKLVGMDPH VEQVKGRLKKDVRTVGIHGMIGIGKTTIASAVCDSVANQFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54300			Protein of unknown function (D...		Lus10018444 [exp]	0	1
AT1G11220			Protein of unknown function (D...		Lus10011239 [exp]	3.2	0.7475
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	5.7	0.7634
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	10.7	0.7745
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	20.4	0.7613
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	33.5	0.7506
AT5G59350			unknown protein		Lus10040839 [exp]	39.0	0.6839
AT1G61370			S-locus lectin protein kinase ...		Lus10034711 [exp]	54.0	0.6648
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	65.7	0.7211
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	75.4	0.7132
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	76.2	0.7024

Compare expression of checked genes

Lus10018444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.