Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49950 320 / 1e-105 GRAS GRAS family transcription factor (.1) AT4G37650 167 / 5e-46 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT5G48150 143 / 2e-37 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 135 / 3e-35 GRAS SCL21 SCARECROW-like 21 (.1) AT1G21450 136 / 1e-34 GRAS SCL1 SCARECROW-like 1 (.1) AT1G50600 136 / 1e-34 GRAS SCL5 scarecrow-like 5 (.1) AT3G03450 124 / 1e-30 GRAS RGL2 RGA-like 2 (.1) AT5G67411 117 / 3e-30 GRAS GRAS family transcription factor (.1) AT5G17490 122 / 7e-30 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G50420 117 / 2e-28 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039709 [exp] 814 / 0 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10014852 [exp] 331 / 4e-109 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 327 / 8e-108 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10019281 [exp] 155 / 1e-41 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 154 / 3e-41 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 152 / 4e-41 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 153 / 2e-40 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012323 [exp] 146 / 3e-38 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 145 / 9e-38 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041500 [exp] 583 / 0 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G119000 [exp] 583 / 0 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.007G053500 [exp] 356 / 4e-119 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 355 / 2e-118 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.017G019900 [exp] 173 / 7e-49 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 169 / 6e-47 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 166 / 2e-46 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G186500 [exp] 153 / 2e-40 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 147 / 3e-38 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 139 / 7e-36 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10018498 pacid=23180364 polypeptide=Lus10018498 locus=Lus10018498.g ID=Lus10018498.BGIv1.0 annot-version=v1.0 ATGAAAACAGAGTTTAGAGCAAACCCTTCATCCATCTCCCTCCAAACCCCTAACAAGAACCTCTTCACTAGCCCTACTCCTCCCCAATCGGCCGCACTGC CCTCGGCCGGAATCTCGGGGGCTCTCAACGGGTGCAGCTTGGGCAGCCTCGACGGCGCGTGCATAGAGAAGCTCCTCCTCCACTGTGCGAGTGCCTTGGA GAGCAAGGAATGGACCCTTGCTCAGCAAGTCATGTGGGTCCTCAACAATGTTGCTTCACTGAGTGATGACCCTAACCAACGGCTCACTTCATGGTTTCTA CGTGCCCTCATTTCGCGGGCTGCGAAGGTGTGTCCCACTGCCATGCATCACTTTGACGGTGGTGGTGGCGGTGGAGGAGGAAGCTCATCTGCCTCCTTTG GAAGCAGGAGGAGGCAGATGACTGTCACTGAGCTGACCGGGTACGTTGACTTGATCCCTTGGCATACTTTCGGGTTTTGTGCTTCGAATGGTGCTGTGTT GAAGGCTATCCAAGGTTGTTCTAAAGTCCATGTGCTAGACTTTAGCGTCACCCACTGCGTGCAGTGGCCGACGCTCATTGATGCGCTGGCTAAGCGTCCT GAAGGACCGCCGTCGTTGAGGCTCACTGTTCCATCGGTCAGGCCCCCAGTCCCTCCCTTACTGAATGTGTCGTGTGAAGAGGTGGGGTTGAGGTTGAGTA ATTTTGCAAAATTTCGAGATGTTGAGTTCGAGTTTAATATCATAGATGGGAGTTTTGACCCTTTGGCATCTTGTATCAAGTCTAGTTCAGATTACTTTCA TCGGTACTGCGAGTCGTTGTTGACCACTTTGACTGATCCTGGTCAACTGTCCTCCCTGATTAGGGAGGACGAGGTCATAGTAGTGAACTGCCAAAACTGG CTTCGTTATTTGTCCGACGATGAATCATCTGCAATTGGTTCCTTGAGGGGCGAATTTCTACGCACGATCTTCGGACTAAATCCGGCCATCGTAGTTGTGG TTGACGAGGATGCAGACCTAAACATGTCGAGTCTAACCATGAGGATCACAAACTGTTTCAACTATCTATGGATCCCTTTCGACGCGCTCGAGACCTTCCT CCCCAAGGAAAGCTCACAGAGAAACGAGTATGAATCCGACATAGGGCACAAGATCGAGAACGTGATCAGCCACGAAGGCGTTCAGAGGATAGAGAGGCTA GAGTCAGGGGCGAAGCTCTGCCAAAGGATGAAGAACGCCGGTTTCTCGAGCATCACGTTCTGCGAGGACACAATCAAGGAAGTCAAGTCGTTGCTCGATG AGCACGCCAGTGGCTGGGGGATGAAGAAAGAGGAGGACATGCTAGTGCTCACTTGGAAAGGTCATAACTCCGTCTTCGCCACCACTTGGGTACCGGGCAA TGGATTAGATCAGGAATGA
AA sequence Show only first row Show all	>Lus10018498 pacid=23180364 polypeptide=Lus10018498 locus=Lus10018498.g ID=Lus10018498.BGIv1.0 annot-version=v1.0 MKTEFRANPSSISLQTPNKNLFTSPTPPQSAALPSAGISGALNGCSLGSLDGACIEKLLLHCASALESKEWTLAQQVMWVLNNVASLSDDPNQRLTSWFL RALISRAAKVCPTAMHHFDGGGGGGGGSSSASFGSRRRQMTVTELTGYVDLIPWHTFGFCASNGAVLKAIQGCSKVHVLDFSVTHCVQWPTLIDALAKRP EGPPSLRLTVPSVRPPVPPLLNVSCEEVGLRLSNFAKFRDVEFEFNIIDGSFDPLASCIKSSSDYFHRYCESLLTTLTDPGQLSSLIREDEVIVVNCQNW LRYLSDDESSAIGSLRGEFLRTIFGLNPAIVVVVDEDADLNMSSLTMRITNCFNYLWIPFDALETFLPKESSQRNEYESDIGHKIENVISHEGVQRIERL ESGAKLCQRMKNAGFSSITFCEDTIKEVKSLLDEHASGWGMKKEEDMLVLTWKGHNSVFATTWVPGNGLDQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	2.0	0.9624
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	2.0	0.9634
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	2.4	0.9620
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	2.8	0.9498
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	4.5	0.9616
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	4.5	0.9530
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	7.2	0.9236
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	9.2	0.9500
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	9.5	0.9515
					Lus10010102 [exp]	10.2	0.8821

Compare expression of checked genes

Lus10018498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.