Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01610 323 / 7e-103 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT3G53230 202 / 1e-57 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 202 / 2e-57 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 201 / 3e-57 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT2G03670 159 / 6e-43 CDC48B cell division cycle 48B (.1) AT1G06430 117 / 4e-28 FTSH8 FTSH protease 8 (.1) AT2G30950 115 / 2e-27 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G50250 113 / 1e-26 FTSH1 FTSH protease 1 (.1) AT3G02450 112 / 2e-26 cell division protein ftsH, putative (.1) AT5G42270 111 / 3e-26 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039722 [exp] 511 / 3e-175 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10037385 [exp] 205 / 1e-58 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 203 / 8e-58 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 202 / 1e-57 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 202 / 1e-57 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 202 / 2e-57 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 185 / 7e-53 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10002639 [exp] 171 / 3e-46 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10020255 [exp] 166 / 3e-44 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151600 [exp] 390 / 3e-128 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.016G091600 [exp] 206 / 5e-59 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 205 / 1e-58 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 204 / 2e-58 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 202 / 1e-57 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 197 / 1e-55 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 168 / 5e-46 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.002G220366 [exp] 113 / 1e-28 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.006G035000 [exp] 118 / 2e-28 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.002G215100 [exp] 116 / 9e-28 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10018508 pacid=23180436 polypeptide=Lus10018508 locus=Lus10018508.g ID=Lus10018508.BGIv1.0 annot-version=v1.0 ATGATGAATGGAAGCAATGGAGGTAAAGGTAAAGGAGGGGAAAGGGTTAGGAAATCGGAAGGTAAAGCCTTGAGCAGCGATAGCATTGAGGTTAAGGGTG GTAAAGAAGGGCCGAGGTTCAAGGATTTTGGAGGGTTGAAGACAGTGCTGCACGAATTGGAGACTGAAGTGTTCTGTCTGTTGAATTGTGAATTGTCAGG TGCGTCGGAGGAGTATATTCCAGAGCTTTTCTCTAAAGCATATAGGACAGCACCGTCGATCATTTTCATTGATGAGATCGATGCCATTGGTTCCAAGAGA GAAAATCTACAGAGAGAGATGGAGCGAAGAATCGTGACGCAGTTGATCACTTGCATGGACGAATACCATAAACTTGTGGAACCAGCTGGTGATAATTCTA AGCAAGACAGCTCCGAACAAAGAAGTGGCTATGTTCTAGTCATTGCAGCTACTAACAGGGCTGATGCCATTGATTCTGCACTAAGAAGGCCCGGAAGATT TGACAGGGAGATTATGTTGGGTGTCCCGGACAAGGAGGCTAGGGTTCACATTCTTTCAGTGCTTACAAGCAAATGCACGCTCGAGGGTTCATTGGATCTT TCGGTAATAGCTAGGCTTACCCCTGGATTTGTCGGTGCTGATTTAGGCGCCCTATGTAGGAAAGCAGGCAACCTCGCTGTGAGGAGGATTGCTGCTTCGA GGAGATCCACGTTATTATCTGAAGAACTTTCATTACCTGCAGAACTTAGGGAGGACCAAAGTATGGACTGGTGGAAAACACATTGGTTAGCTGAGGAGAT TGAAAAACTTCCCATCACAATGGATGATTTTGAGCAAGCAGCGAAGTTGGTTCAACCGTCATTAACAAGAGAAGGATTCTCTTCTGTTCCCAATATAACA TGGGAAGATGTTGGAGGACTTCAAAGCATTCGGAATGAGTTGGAGAGTTATGTAGTCCAAGTGCATAAAAAATCCAAAAGTCTACCAGGCCCTCCTGGCT GTGGCAAGACACTGATTGCCAAGGCTGCTGCTAATGAAGCAGGTGCTAACTTTATTCACGTCAAGGGTCCTGAGCTACTTAATAAGTATGTTGGAGAAAG TGAACTGTTTATTATCTTTGTTAAGTTTCGAAAGAATCTTGGTCTTGTTTTCTCTGCATCGTTCCAATTTTATCGGATGTCTCAGAGGACAAGAATATCG GTCTTGTGGAAAGTTGTGATTGCTATTAATCGTAAATACATCCCAAGTTCAAAAAATATGGGTCGAGATTGGTTAGAATACCGATCGTAA
AA sequence Show only first row Show all	>Lus10018508 pacid=23180436 polypeptide=Lus10018508 locus=Lus10018508.g ID=Lus10018508.BGIv1.0 annot-version=v1.0 MMNGSNGGKGKGGERVRKSEGKALSSDSIEVKGGKEGPRFKDFGGLKTVLHELETEVFCLLNCELSGASEEYIPELFSKAYRTAPSIIFIDEIDAIGSKR ENLQREMERRIVTQLITCMDEYHKLVEPAGDNSKQDSSEQRSGYVLVIAATNRADAIDSALRRPGRFDREIMLGVPDKEARVHILSVLTSKCTLEGSLDL SVIARLTPGFVGADLGALCRKAGNLAVRRIAASRRSTLLSEELSLPAELREDQSMDWWKTHWLAEEIEKLPITMDDFEQAAKLVQPSLTREGFSSVPNIT WEDVGGLQSIRNELESYVVQVHKKSKSLPGPPGCGKTLIAKAAANEAGANFIHVKGPELLNKYVGESELFIIFVKFRKNLGLVFSASFQFYRMSQRTRIS VLWKVVIAINRKYIPSSKNMGRDWLEYRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10018508 [exp]	0	1
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	9.1	0.6604
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	11.1	0.6332
AT5G10710			unknown protein		Lus10026943 [exp]	17.7	0.5714
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10034719 [exp]	19.2	0.5660
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017663 [exp]	68.6	0.4997
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10007422 [exp]	82.6	0.5100
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	221.2	0.4432

Compare expression of checked genes

Lus10018508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.