Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 164 / 1e-49 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G10280 163 / 2e-48 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT1G06180 160 / 3e-48 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT5G16770 161 / 1e-47 MYB ATMYB9 myb domain protein 9 (.1.2) AT1G16490 159 / 2e-47 MYB ATMYB58 myb domain protein 58 (.1) AT1G79180 158 / 6e-47 MYB ATMYB63 myb domain protein 63 (.1) AT5G65230 158 / 1e-46 MYB ATMYB53 myb domain protein 53 (.1) AT3G23250 157 / 2e-46 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G34990 154 / 1e-45 MYB ATMYB32 myb domain protein 32 (.1) AT3G12820 153 / 1e-45 MYB ATMYB10 myb domain protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039736 [exp] 202 / 7e-65 AT3G23250 69 / 5e-14 myb domain protein 15 (.1.2) Lus10033737 [exp] 205 / 3e-64 AT4G21440 168 / 6e-49 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10042561 [exp] 169 / 5e-52 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10022021 [exp] 164 / 3e-50 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10033889 [exp] 166 / 5e-50 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10039771 [exp] 164 / 5e-50 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10033738 [exp] 164 / 2e-49 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10003557 [exp] 164 / 6e-49 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10018547 [exp] 162 / 6e-49 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118800 [exp] 197 / 2e-62 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.019G118700 [exp] 187 / 1e-58 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.013G149100 [exp] 185 / 9e-58 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.013G149200 [exp] 166 / 4e-50 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 164 / 9e-50 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 161 / 2e-48 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 160 / 9e-48 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G050900 [exp] 160 / 4e-47 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.002G038500 [exp] 158 / 5e-47 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.011G125900 [exp] 159 / 8e-47 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018518 pacid=23180438 polypeptide=Lus10018518 locus=Lus10018518.g ID=Lus10018518.BGIv1.0 annot-version=v1.0 ATGGTGAGAGGAGCTTTCTACGACAAGAATGGAGTGAAAAAAGGCGCGTGGAGCAAAGAAGAGGACGACAAGCTACGCGCCTACATTGCCAGGTACGGCC ACTGTAACTGGCGGGAGCTGCCCAAGTTCGCCGGACTTTCTAGGTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAATTACCTCCGCCCTGATTTGAAGCA CGGCGGCTTCACTCCGGAAGAGGATCGGCTGATCACTGACCTCCGGCAACAGCTTGGAAATAAATGGTCTACGATTGCTTCGAAAATATCTGGAAGAACG GACAACGAGATAAAAAACTATTGGCATGCTCATTTGAAGAAAAGAGTAACAACAGAACAGAGGACGCCCGCCGGTCAGAGCCAGAGCAGCAACAAGTCAT CACCACCAACCTCGTCGTGTTCATCAGATCTACAAAATTCCGGCAGTCAAAGTCAATGTCAAACGTCTCAAGTACTGAAAGAAACGTTAAAAATACTGGA GAGCTCCCCATTATCGCCGCCGGAAACCTCCTCCTACGCTTCCGGCGGTGAGTCTTCTGCGGCGGCCGTAGGTAGGCGGGAAAACTGTACAATTGACGGC GACAGCAATAGTGGTGGTTGTTGTCATTATGATGATGGTGGAGATTTCTGGACGGAGCCGTTCGTGGTGGAAAGTAGTATTAGTAGTGGCGGCGGCGGTA GTTCCGGTGATCTGCCGATGTGGTGGATGGGAGGGGAATCTATGACGTGGCCAGATGAGTTTTTGTTGGATAATGATGATGCAAAAGATGTACTCGTAAA GTTAGGATAG
AA sequence Show only first row Show all	>Lus10018518 pacid=23180438 polypeptide=Lus10018518 locus=Lus10018518.g ID=Lus10018518.BGIv1.0 annot-version=v1.0 MVRGAFYDKNGVKKGAWSKEEDDKLRAYIARYGHCNWRELPKFAGLSRCGKSCRLRWINYLRPDLKHGGFTPEEDRLITDLRQQLGNKWSTIASKISGRT DNEIKNYWHAHLKKRVTTEQRTPAGQSQSSNKSSPPTSSCSSDLQNSGSQSQCQTSQVLKETLKILESSPLSPPETSSYASGGESSAAAVGRRENCTIDG DSNSGGCCHYDDGGDFWTEPFVVESSISSGGGGSSGDLPMWWMGGESMTWPDEFLLDNDDAKDVLVKLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	0	1
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	1.4	0.9786
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	2.4	0.9737
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10040150 [exp]	2.4	0.9676
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	2.6	0.9632
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	3.5	0.9722
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	4.5	0.9714
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	4.7	0.9563
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	5.0	0.9687
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	6.0	0.9593
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	8.9	0.9570

Compare expression of checked genes

Lus10018518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.