Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02940 161 / 9e-48 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 162 / 1e-47 MYB ATMYB93 myb domain protein 93 (.1) AT3G23250 160 / 1e-47 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT5G15310 160 / 1e-47 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT2G31180 157 / 6e-47 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G65230 157 / 3e-46 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 157 / 6e-46 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 156 / 8e-46 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G01140 157 / 9e-46 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G10280 155 / 2e-45 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039771 [exp] 214 / 2e-69 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018546 [exp] 211 / 1e-68 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10039772 [exp] 194 / 3e-61 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018547 [exp] 194 / 3e-61 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039734 [exp] 177 / 2e-55 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10033738 [exp] 174 / 2e-53 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10039735 [exp] 171 / 1e-52 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10031607 [exp] 168 / 5e-51 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10021871 [exp] 155 / 9e-47 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149200 [exp] 181 / 3e-56 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 176 / 2e-54 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149100 [exp] 164 / 1e-49 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.013G148600 [exp] 163 / 5e-48 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 162 / 1e-47 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 161 / 1e-47 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.019G118700 [exp] 159 / 1e-47 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.010G165700 [exp] 162 / 2e-47 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.019G118200 [exp] 161 / 2e-47 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.005G074500 [exp] 160 / 4e-47 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018545 pacid=23180393 polypeptide=Lus10018545 locus=Lus10018545.g ID=Lus10018545.BGIv1.0 annot-version=v1.0 ATGGCGAGAACTCGTTACGTTGACCGGAACGGATTGACCAAGGGAACTTGGACCCCTGAAGAGGACAGGAAGCTTGCAGCCTATGTTTTCCAGTACGGCT GCAAGAACTGGCGCCAGCTGCCGAAAGCAGCCCGTCTGGCGAGGTGCGGGAAGAGCTGCCGGCTCCGGTGGCTCAACTATCTTTGTCCGGATATCAAGAG AGGCAATTTCACCACAGAAGAGCGGGCTTCCCTCGTCGCCTTGCGCGAATCTCTAGGCAATAAATGGTCAGTGATTGCAACTCACTTGCCAGGAAGGACA GACAGCGAGATCAAGAACTACTGGAACACATACCTCAAGCCTAGACCAGAAGCAAAATCCGTCCTCGATCCACCTCATGTACACCCAACCAACATCCTTG ATAACGAAAATATCGTTCCCTATACCGATATTTCGGATCGCGAACAACAAGAAACTAATAGTACATTAACCCAAACCTACCAAAGCAACCATGAAATGAT CACTACTGTTCATGGAGAAGATCAGTCACTTGATCAGATGGTCGCCGGGGGGAATTACTCGGATGCCAGTGCTTGGTCTGATCAATCGACAGTTACGAAT GACCGTCATGAGTTCGTCGATGATGATCTTATTGGTGACGATTTCTGGTCAAAGTCATTCTTGACTGATTATGGGGGTGATCATGATCAGTACTATACAG CAATGCAGAGTGAGATTTACGGTACTGATGATGAATTTCAGTTGGCCAAAGACACCCTTTGGCTTGATTATGAATTGAACTATAGGTACACTTAA
AA sequence Show only first row Show all	>Lus10018545 pacid=23180393 polypeptide=Lus10018545 locus=Lus10018545.g ID=Lus10018545.BGIv1.0 annot-version=v1.0 MARTRYVDRNGLTKGTWTPEEDRKLAAYVFQYGCKNWRQLPKAARLARCGKSCRLRWLNYLCPDIKRGNFTTEERASLVALRESLGNKWSVIATHLPGRT DSEIKNYWNTYLKPRPEAKSVLDPPHVHPTNILDNENIVPYTDISDREQQETNSTLTQTYQSNHEMITTVHGEDQSLDQMVAGGNYSDASAWSDQSTVTN DRHEFVDDDLIGDDFWSKSFLTDYGGDHDQYYTAMQSEIYGTDDEFQLAKDTLWLDYELNYRYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10018545 [exp]	0	1
AT1G64870			unknown protein		Lus10041678 [exp]	7.5	0.7730
AT1G78550			2-oxoglutarate (2OG) and Fe(II...		Lus10011987 [exp]	9.2	0.7487
					Lus10002237 [exp]	16.0	0.7523
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	16.6	0.7594
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	19.1	0.7510
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	37.0	0.7477
AT4G05030			Copper transport protein famil...		Lus10025179 [exp]	40.7	0.7059
AT1G62935			unknown protein		Lus10009297 [exp]	51.3	0.7197
					Lus10010306 [exp]	61.3	0.6944
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	64.8	0.7157

Compare expression of checked genes

Lus10018545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.