Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34670 176 / 2e-53 MYB ATMYB93 myb domain protein 93 (.1) AT4G21440 175 / 2e-53 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G10280 172 / 1e-52 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT3G02940 172 / 2e-52 MYB ATMYB107 myb domain protein 107 (.1) AT2G31180 169 / 2e-52 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G65230 170 / 6e-52 MYB ATMYB53 myb domain protein 53 (.1) AT5G15310 170 / 6e-52 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 171 / 3e-51 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G16770 169 / 3e-51 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 167 / 4e-51 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039771 [exp] 390 / 1e-139 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018547 [exp] 230 / 5e-76 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039772 [exp] 225 / 3e-74 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018545 [exp] 211 / 3e-68 AT1G34670 159 / 1e-47 myb domain protein 93 (.1) Lus10039734 [exp] 177 / 6e-56 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10031607 [exp] 177 / 4e-55 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10011820 [exp] 177 / 4e-55 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10033738 [exp] 176 / 1e-54 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10021185 [exp] 175 / 1e-54 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118900 [exp] 192 / 2e-61 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149200 [exp] 181 / 9e-57 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G164900 [exp] 178 / 7e-55 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.005G074500 [exp] 175 / 1e-53 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.013G148600 [exp] 176 / 2e-53 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 176 / 2e-53 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 175 / 3e-53 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.019G118800 [exp] 172 / 4e-53 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.008G166700 [exp] 172 / 6e-53 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G096800 [exp] 173 / 8e-53 AT1G34670 305 / 2e-102 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018546 pacid=23180421 polypeptide=Lus10018546 locus=Lus10018546.g ID=Lus10018546.BGIv1.0 annot-version=v1.0 ATGGCGAGGACTCCTTACGTTGATAGGAACGGGTTGAAGAAGGGAACCTGGACTCCTGAGGAAGACATGAGGCTTGCGGCGTATATTTCGAGATACGGCT GCCGGAACTGGCGCCGGTTGCCTGAAGACGCGGGGTTGAAGAGGTGTGGGAAGAGCTGCCGGCTCCGGTGGCTGAACTATCTCCGGCCGGATATCAAGAG AGGGGGGTTCACTAAGGATGAGGAAGCTACTATCCTTGCTTTACATGAAAAGCTAGGAAATAAATGGTCGATAATAGCGACTCACATGTCAGGGAGAACC GACAACGAGATAAAGAATTTATGGAACACGCACCTAAGGAAACTGCAACCTCCAGTAGAACTTCAGAAAGAAGCTACGTGTTCGAACATTGATGCCGTCG ATGATCATCACTCTCCTCAGCAGATTTCTGCCGGGAGCAATGCATCATCGGGAACCAGCTGTGTGGCGGCAGATCAAGCGATGTCGATAAGTAGATCGGT GGCGCCGACGGGAAATGATGAAGTACTTATTAGCGACGATTTCTGGTCACAACCATTTTTGCCTTATGGGGAAGATATTGATCAGGGTACTGAGGCTTAC GGTACCAGTGGGGATGAGTTCCAAATGGAACGAGAGATGCTTTGGTTTTATCATGCATTGATGAATTACTCTTATTAA
AA sequence Show only first row Show all	>Lus10018546 pacid=23180421 polypeptide=Lus10018546 locus=Lus10018546.g ID=Lus10018546.BGIv1.0 annot-version=v1.0 MARTPYVDRNGLKKGTWTPEEDMRLAAYISRYGCRNWRRLPEDAGLKRCGKSCRLRWLNYLRPDIKRGGFTKDEEATILALHEKLGNKWSIIATHMSGRT DNEIKNLWNTHLRKLQPPVELQKEATCSNIDAVDDHHSPQQISAGSNASSGTSCVAADQAMSISRSVAPTGNDEVLISDDFWSQPFLPYGEDIDQGTEAY GTSGDEFQMEREMLWFYHALMNYSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10018546 [exp]	0	1
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10041286 [exp]	2.8	0.7737
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	9.1	0.7895
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	20.8	0.7314
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	25.2	0.6731
AT2G14560		LURP1	LATE UPREGULATED IN RESPONSE T...		Lus10009095 [exp]	25.6	0.6820
					Lus10022108 [exp]	37.5	0.6360
AT5G23510			unknown protein		Lus10029154 [exp]	37.6	0.6700
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	38.4	0.6360
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	39.2	0.6393
AT5G36930			Disease resistance protein (TI...		Lus10002249 [exp]	39.2	0.6228

Compare expression of checked genes

Lus10018546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.