Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 178 / 4e-54 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 176 / 1e-53 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G10280 174 / 7e-53 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT3G23250 172 / 8e-53 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G02940 172 / 3e-52 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 169 / 2e-51 MYB ATMYB41 myb domain protein 41 (.1) AT1G56160 169 / 2e-51 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT5G65230 169 / 3e-51 MYB ATMYB53 myb domain protein 53 (.1) AT1G34670 171 / 4e-51 MYB ATMYB93 myb domain protein 93 (.1) AT2G31180 167 / 4e-51 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039772 [exp] 403 / 7e-144 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039771 [exp] 234 / 7e-78 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018546 [exp] 230 / 4e-76 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10018545 [exp] 194 / 3e-61 AT1G34670 159 / 1e-47 myb domain protein 93 (.1) Lus10039734 [exp] 182 / 2e-57 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10039735 [exp] 178 / 3e-55 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10033738 [exp] 177 / 1e-54 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10031607 [exp] 175 / 5e-54 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10036472 [exp] 173 / 2e-52 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149200 [exp] 185 / 4e-58 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 181 / 1e-56 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.007G093900 [exp] 178 / 2e-54 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.008G166700 [exp] 176 / 3e-54 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.005G074500 [exp] 177 / 6e-54 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.013G149100 [exp] 174 / 8e-54 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.019G118800 [exp] 174 / 8e-54 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.005G164900 [exp] 176 / 2e-53 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.013G148600 [exp] 176 / 3e-53 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 175 / 6e-53 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018547 pacid=23180405 polypeptide=Lus10018547 locus=Lus10018547.g ID=Lus10018547.BGIv1.0 annot-version=v1.0 ATGGCAAGGACTCCCTACGTTGACAGAAACGGACTGAAGAAGGGGACTTGGACTCGTGACGAAGACGTGAAGCTTGCGGCCTATGTTTCGAGATACGGCT GCCGGAACTGGCGTCGGTTGCCTCGAGATGCAGGCTTGGCGAGGTGCGGGAAGAGCTGCCGGCTCCGGTGGCTGAACTATCTCCGGCCGGATATCAAGAG GGGGAATTTTACGCAGGAGGAGGAAGCTGCCATCGTTTCCTTGCATGAAAAGCTGGGGAATAAATGGTCAGTAATTGCGACTTATATGCCAGGGAGGACA GATAACGAGATTAAAAACTTCTGGAACACACACCTCAAAAGGTTACAGCCTAAGGAAGAACCTTTGGAGTCGAACGTGTCAGATGAAAACGACCGTCACG TTCTTCTAGGGTCGAATTTTGGAGCCGGTATCAAGAATGAATTTTCTGATTTCGATGAAATTAGCTCATGGATCGAAAATTACAACGAGGACATCAATCA CGCCGCTATTGAAGTGTCTGTGTCACCACATGATCTCGATCATTACTCTCCTGATCATCATATGTCCGTCGGGAGCAATTCCTCGTCGAACTCCGAGACA GAAATGGCAACAACGGCGGTGGCGTCTAATGATGAGTTAGGGGATCTCATTAGTGACTATATCTTGTCACAACCATTTTCGACCTATGAGGAAGTTGATC AGTACGACACATGGTGGAGTGAGGTTTGGCGTACCAGTACCAACACTGATCAATTCCAGTATATATGA
AA sequence Show only first row Show all	>Lus10018547 pacid=23180405 polypeptide=Lus10018547 locus=Lus10018547.g ID=Lus10018547.BGIv1.0 annot-version=v1.0 MARTPYVDRNGLKKGTWTRDEDVKLAAYVSRYGCRNWRRLPRDAGLARCGKSCRLRWLNYLRPDIKRGNFTQEEEAAIVSLHEKLGNKWSVIATYMPGRT DNEIKNFWNTHLKRLQPKEEPLESNVSDENDRHVLLGSNFGAGIKNEFSDFDEISSWIENYNEDINHAAIEVSVSPHDLDHYSPDHHMSVGSNSSSNSET EMATTAVASNDELGDLISDYILSQPFSTYEEVDQYDTWWSEVWRTSTNTDQFQYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	2.4	0.8824
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	3.0	0.8725
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	3.0	0.8913
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	3.9	0.8541
AT1G74400			Tetratricopeptide repeat (TPR)...		Lus10002903 [exp]	4.6	0.8050
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	7.3	0.8536
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	7.7	0.8716
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	7.9	0.8491
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10038228 [exp]	14.1	0.8024
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	15.5	0.8035

Compare expression of checked genes

Lus10018547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.