Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20880 163 / 5e-47 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 154 / 9e-44 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 123 / 3e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G39780 122 / 3e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 121 / 6e-32 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G78080 122 / 1e-31 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT2G22200 115 / 1e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 115 / 2e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 116 / 4e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 94 / 2e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039809 [exp] 428 / 1e-149 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10033463 [exp] 127 / 5e-33 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 124 / 3e-32 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016801 [exp] 122 / 3e-31 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 118 / 5e-31 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 118 / 7e-31 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10022497 [exp] 120 / 1e-30 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016669 [exp] 112 / 5e-28 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10007124 [exp] 111 / 7e-28 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102200 [exp] 193 / 5e-57 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 191 / 5e-56 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.007G090600 [exp] 132 / 7e-35 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 127 / 2e-33 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 127 / 3e-33 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 125 / 3e-32 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 113 / 1e-27 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 108 / 1e-25 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.001G067600 [exp] 97 / 3e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 97 / 5e-23 AT5G13330 142 / 5e-42 related to AP2 6l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10018578 pacid=23180428 polypeptide=Lus10018578 locus=Lus10018578.g ID=Lus10018578.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTAGGAACAACACAGGGAAATCAAAAAAAGGAGAGTTTCGGAACATGAGGGATTCTTCTTCTTCTTCTTCTTCATCTGCCATGGCGGGAA GGGAATTAAGACCTCTGAAAAAGATCCGAAGTCCCGACCGACTCGATCTTAGCCAGCAGCTAGCTTTCCTCCAACAGCAGCAGCAATTTCAACACTCTTT ACCCAATCCACCATCTTCTTCTTCAAATTCCATTTCAAATTCCCCTGTTTTCGCTTCCAAGTTCCCTTTCGCCGTCGACGGCTGTTCCTCCTCGTCGAAT TGGCCGATCAATTTCCCTCCTCCGGCTCAGCCGCCGCAGAACCCGAACCAGATGATTTCATTCGGCCAGAATCAGAACCAGTCATTCATGGTGGCGAACT CGTTCCACCACCAACAGCAGCTGTTCCGCTACTGGAACGACACGCTGAATCTGTCCCCGAGGGGACAGCTGGTGGTCGGGCCAGACGGCTGTCGATTCTT CCGGCCGTCGGCGACGGCGATGGCGGCAACGATGCCGATCCAACCGATCAACACGACAAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGAAAATGG GTCGCCGAAATCCGCCTCCCGAAGAACCGCACCCGCCTCTGGTTAGGAACGTTCGACACCGCAGAAGATGCAGCAATGGCGTACGATCGCGAAGCTTTCA AGCTCCGCGGCGAGAACGCCAGGCTCAATTTCCCCGAACTCTTCCTCAACAAGCAAAATCCACCCCCGGAGGAAAGCGAAAGCTCTCCGCAGGTAGTAAC AGCAGAACCTCCTCCCAATGCGGATACGGCGGAGGCAGAGGCAGAGGCAGAGGCCGAGGCCGAAACAGAGCATGATAGCAATTCGGAATCTGCTGCCTCC GCCGCCGCCGACGGCGGCGAAATGGGATGGGGAGAGATGGCGGACGCGTGGCTGAACGCTATACAGGAAGGATGGGGTCCAGGGAGCGCTGTTTGGGATG ATTTAGACGCTAATAACAATCTCTTCCTGAATTCTCAAATCCCATTTCAGAGCAGCAATCAGCAGCAAGGAGAAGGAATAATCTCTGCTTCTTCTTCTTC ACAGTCGTCGTCGTCTCCTTGCTTCCAGATGAAGCCATTCTTCTGGAAAGATCAAGACTGA
AA sequence Show only first row Show all	>Lus10018578 pacid=23180428 polypeptide=Lus10018578 locus=Lus10018578.g ID=Lus10018578.BGIv1.0 annot-version=v1.0 MAAARNNTGKSKKGEFRNMRDSSSSSSSSAMAGRELRPLKKIRSPDRLDLSQQLAFLQQQQQFQHSLPNPPSSSSNSISNSPVFASKFPFAVDGCSSSSN WPINFPPPAQPPQNPNQMISFGQNQNQSFMVANSFHHQQQLFRYWNDTLNLSPRGQLVVGPDGCRFFRPSATAMAATMPIQPINTTKLYRGVRQRHWGKW VAEIRLPKNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKQNPPPEESESSPQVVTAEPPPNADTAEAEAEAEAEAETEHDSNSESAAS AAADGGEMGWGEMADAWLNAIQEGWGPGSAVWDDLDANNNLFLNSQIPFQSSNQQQGEGIISASSSSQSSSSPCFQMKPFFWKDQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10018578 [exp]	0	1
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10039809 [exp]	1.0	0.8748
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	8.2	0.7615
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	12.4	0.7325
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	17.4	0.7779
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	19.9	0.7054
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	20.5	0.7515
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10031626 [exp]	21.2	0.7317
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	22.2	0.7629
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Lus10026185 [exp]	26.4	0.6273
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	28.6	0.7318

Compare expression of checked genes

Lus10018578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.