Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 549 / 9e-173 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 543 / 1e-171 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 490 / 6e-150 transmembrane receptors;ATP binding (.1.2) AT5G44510 464 / 3e-142 TAO1 target of AVRB operation1 (.1) AT4G12010 454 / 3e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 452 / 8e-138 Disease resistance protein (TIR-NBS-LRR class) (.1) AT1G69550 452 / 6e-136 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 448 / 6e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 453 / 2e-135 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18350 436 / 4e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 2280 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 563 / 3e-179 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 530 / 9e-167 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 525 / 1e-164 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 504 / 7e-158 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 484 / 7e-149 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 481 / 2e-147 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 459 / 9e-140 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001375 [exp] 460 / 3e-138 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206400 [exp] 902 / 0 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 840 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 649 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 634 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069200 [exp] 619 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001600 [exp] 616 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069500 [exp] 601 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.007G099700 [exp] 595 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 590 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 584 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018616 pacid=23180483 polypeptide=Lus10018616 locus=Lus10018616.g ID=Lus10018616.BGIv1.0 annot-version=v1.0 ATGGCTTCCAACAACGACGGAGACGACGACTGCGACATTTCCCCCGCCGTGGAGCCGTCTCGTGCTCGGTGGAACTACGATGTCTTCCTGAGCTTCAGAG GAGCCGACACGAGAACTGGATTCACCGGCCACCTCTACTCGGCGCTCCTCCGCGATGGGATCCACACTTTCCTCGACAACAAAGAGATGGAGACCGGCGG AGAGGTGGGTCCGGAGTGCCTGAGAGGGATCGAAGAGTCGAGGTTCTCCTTCGTCGTCCTGTCCCAACACTACGCTTCCTCGACCTGGTGTTTGGAGGAG CTCGTCCACATCCTCAAATGCAGGAGGGAAGAGGGTCACGGCGTCTGGCCGGTGTTCTACGGCGTAGATCCGTCGGACGTCGAGGAGTGCAGGGGGAGCT TCGCGGATGCGTTCGCCAAGCACGAGGTGGATTTCAAATCGGAGATTGAGACAGGGAAAAGGACGATCGGCGAGTGGGAAGGGTTCACGGCTCGGATTGA AGAGTGGAAATCTGCGCTCCGTGAAGTCTCTTATCTGAAAGGATTGGATGTACGGAACCACGCCGATGGCAACGAAGCAACGAATATCGAGCACCTGGTG AAGGAGATCTCCAAGAGACTTGACAGAAAAGTTCTGAGTGTTGCTAGAAATCCTGTAGGGGTTCGTCCTCGAGCACAGCCGGTGATTTCTTTCCTGGGTT TTGACTCTCCAGGTGTCCATGTCGTTGCGATATATGGAATGGGGGGAGTTGGCAAGACTACAGTGGCTAAGGAGGTTTACAATTCGGTCTTCAACAATTT CGAAGGCTCTTGTTTCCTGTCGAATGTCAGAGAACAATTGGCGGTCAAAGGTGTAACTTACTTGCAGAGGCAACTCCTCTCCGAGATCCTGAAGAGGAAA TACGAGAAGATTGACAACGGTGATCGAGGGTTGAATCTCATACGAGACAGATTATGCCACAAAAAGCTTATTCTTGTCCTGGACGATGTGGAAGAAATGA GTCAAGTGAACAAAGTGATTGGAAACCTTGCTTGGCTATCCGAAGGTAGCCGAGTGGTCATCACTACTAGAACCAAGAATCTCCTGCAACCATCTGAATT CTTTTGGCAGTATGAGGTTCAGGAATTAGATGAGAGGGATTCTCTGGAGCTCTTGAGTTTGCACGCCTTTGATAGGCACGATCCACCGGAACACTACGAA GATAGTGCCGGACAGATGCTGCAATATACCAGGGGAGTTCCGCTAGCTCTTGAAGTTTTGGGTAGTTCGTTACGTGGCCAAGCTGTCGAAATATGGAATA GCAGAATGGAGAAGCTTAAGCTGATGGCTAATGAAGATATCCAGCCTGTGTTAAAGACGAGCTATGATTCGCTTGATGATACTGAGAAGTTCATATTCCT CGACATTGCTTGCTTCTTTGTTGGATATGATAAGAACTATGTGATGAGCATACTTGAAGGTTGTGGTTTCTTTCCAACTGATGGAATCAATACTCTGATG AGGCGGAGCCTTTTGAAAGTCGATTATCGGAACAAGCTATGGATGCATGATTTGCTTCGGGGCGTGGGGAGAGAAATCGTTCGTCAGGAGAGTCCTGTAG ATCCCGGGGAGCGTAGCAGGTTATGGCGTCATGAAGATGTTTCAGACGTGCTAACTAGTAAAACAGGGACAAAAGTCATTGAAGGGCTGGCAGTGAACTC ACCAGGAATTGAATTTTCTGCAACTGCAAAGGCATTCAAGAAGATGAAAAGGCTGAGACTGCTGAAGCTCAATCATGCGCGTCTCAAGGGATATGAGTAC ATTTCTTGTAAGTTGAGGTGGCTGTGCTGGCATGGATTCTCATTGGAATCTATCCCGTCAGACTTTGAATTGGAGAATCTGATTGCTCTTGATCTTCGTC ACAGCAGCCTGGAAATTTTCTCAGAGGAAGACGTGAAGTCCATGAAGAAGCTGAAATTCCTTGACCTGAGCTACTCTCTTAAGCTCATCAGGACTCCTAA TTTCGAGGATATCCCAAAGATTGAGAAACTGAAGCTCAAGGGCTGCATTAGCTTGGAACAAGTTCATGACTCCATCAGATATCTTACTCATCTCCGTTCT CTCAATTTACAAGGATGCCACAAGCTTAAAACTCTGCCAGCCAGCATTGGTGCCCTGGCCGGATCGATTGTGACCCTGAACATGTCCGGTTGCTCAGCAC TCGAGATGTTACCCGTATCCATCGGCTCTCTTGATCATCTTGCTCTCTTGAATTTGAAAGAATGCAGGAATCTTAAACGCCTCCCATCAAGCATCGGTGG TCTGAAATCTCTCACAGACTTGGACTTGTCAGGCTGCTCGGAAATCGAAGAACTGCCCGAATCTATTGGACTCTTGGTTCGTCTCGAATCCTTAAACATG TCTGGTTGTTCCAAACTGGAGCTACTTCCGGATTCCATTGGTTCTCTCACTCGCATACCGATTTTAAATTTGAGAGGCTGCACAAGTCTTAAGTATCTCC CTCAAAGCATTGGTGCTCTAAAGTCATTGAAGAAGATCAACCTGTCAGGATGCTCAAGTCTTGTCGAGTTACCTGAGGGAATTGGAGCTTTAGAGCCTTT ACTTGTACTTATGGCCAACGAAACTGCATTGGCTACTCTCCCGGAGACGACTTCAAACCTTAAGAAGCTTAAAGTGTTATCTCTACGCGGATGTGACCGG TTGTTCTTCGCTCCGAAGAACAACCCTTCAGTGCTCAACTTCCTTCCTGCTTCCTTGCGCAGATTGGATCTTAGACACTGCAACATAACGGACGAGATAA TGCCTGGAGATCTAGGAAGTTTGCGTCTCCTGAACATCTTGAAGTTATGCGGGAACAACTTTACTTACTTGCCAAAGAGCATCAATTCCTTACCGGAACT CGTTGAACTCTGGCTGAACAAGTGCAGGACACTTAGAAGAATACCGGAGCTTCATTCGGGTGTTGAAGTGTTGCAGGCTAATGACTGCCCGTCGCTGGAG ACGATCAACTTGAGAAACTACCATGGAGCTGCGGGCTTGGAAGTTAAGGGGTGTATGAACTTGAGAGAGATCGAAGGGTTTTATAGCTTGGAAACACTTA AACCTGAAACGTTTGAGGTTCTTGAAAGTTGTGGGTTCGTATTTTCGCAGGGTTCGGCATCAAACGTCGGAACTTACAAGGCTCTGGCAGAAAGGGGGAT CTACAGCCTGTTCATCCCATCAACCAAAATTCCAACGTGGTTCACCCATCAAACAGAAGGCGACACCATATCCTTTCGTGTACCTCAACTTCCTAAAGGC TCCACCATCACCGGGATCGTTACTTGCACGATTTACGCGTGGGATCGCCCCAGGGAGTCGTGCTTCTTCATGCCGTACATCAGAGTTGTCAACAGAACAA AGTTGTTCGACTGGCAGTACACTCCACACATCACCTTCTTCGTGAACAACGACGAGACCCACAGAGAGACCATGTGGCTCTGCCACTGGACTTTCGACCC GAATGCAGTACACGTGGACGACATCGATGCTGGCTGGAGGTTAATGGGCGAGACCGAACAAGGCGACGAGGTTGAGTTCTGTGTTGACATGGGGTATGGG ATTCGAGTCAAGAAATGCGGCGTCCATCCACTTTATAGTAACAACTTTGGTGATGAGACCTTGAAGCTTCTGAGGGCGATTTCATCTTCTTCGTCGTTGA TGCATCGTAGGAGGTTTTCGCAGTCCCGGCCACGGTGCTTGACGATCGGGAGCTCGAAGAAGATGAGAGGGGAAATGTTCTACGGTGGACCAAGTCATGA TAACCTATATATTGAGTGGTCCAAGCTAAGGTCGAAAAGACTGGAGGATAGCACTGCTTTCCTACTGTCTGCAAATGGAGAAGCAACGGAATCGGACAAC GGTGATGGTTCGAGATCGAAGGACGACATGGAATGGCTTGATTACTGCGAGAGTGACGACGATGATGAAGAAGGGGATGAGAGTGAGCTTTATGAGGTTT CTGAGGAGGAAGGAGATGAAGAAACGCAGTAG
AA sequence Show only first row Show all	>Lus10018616 pacid=23180483 polypeptide=Lus10018616 locus=Lus10018616.g ID=Lus10018616.BGIv1.0 annot-version=v1.0 MASNNDGDDDCDISPAVEPSRARWNYDVFLSFRGADTRTGFTGHLYSALLRDGIHTFLDNKEMETGGEVGPECLRGIEESRFSFVVLSQHYASSTWCLEE LVHILKCRREEGHGVWPVFYGVDPSDVEECRGSFADAFAKHEVDFKSEIETGKRTIGEWEGFTARIEEWKSALREVSYLKGLDVRNHADGNEATNIEHLV KEISKRLDRKVLSVARNPVGVRPRAQPVISFLGFDSPGVHVVAIYGMGGVGKTTVAKEVYNSVFNNFEGSCFLSNVREQLAVKGVTYLQRQLLSEILKRK YEKIDNGDRGLNLIRDRLCHKKLILVLDDVEEMSQVNKVIGNLAWLSEGSRVVITTRTKNLLQPSEFFWQYEVQELDERDSLELLSLHAFDRHDPPEHYE DSAGQMLQYTRGVPLALEVLGSSLRGQAVEIWNSRMEKLKLMANEDIQPVLKTSYDSLDDTEKFIFLDIACFFVGYDKNYVMSILEGCGFFPTDGINTLM RRSLLKVDYRNKLWMHDLLRGVGREIVRQESPVDPGERSRLWRHEDVSDVLTSKTGTKVIEGLAVNSPGIEFSATAKAFKKMKRLRLLKLNHARLKGYEY ISCKLRWLCWHGFSLESIPSDFELENLIALDLRHSSLEIFSEEDVKSMKKLKFLDLSYSLKLIRTPNFEDIPKIEKLKLKGCISLEQVHDSIRYLTHLRS LNLQGCHKLKTLPASIGALAGSIVTLNMSGCSALEMLPVSIGSLDHLALLNLKECRNLKRLPSSIGGLKSLTDLDLSGCSEIEELPESIGLLVRLESLNM SGCSKLELLPDSIGSLTRIPILNLRGCTSLKYLPQSIGALKSLKKINLSGCSSLVELPEGIGALEPLLVLMANETALATLPETTSNLKKLKVLSLRGCDR LFFAPKNNPSVLNFLPASLRRLDLRHCNITDEIMPGDLGSLRLLNILKLCGNNFTYLPKSINSLPELVELWLNKCRTLRRIPELHSGVEVLQANDCPSLE TINLRNYHGAAGLEVKGCMNLREIEGFYSLETLKPETFEVLESCGFVFSQGSASNVGTYKALAERGIYSLFIPSTKIPTWFTHQTEGDTISFRVPQLPKG STITGIVTCTIYAWDRPRESCFFMPYIRVVNRTKLFDWQYTPHITFFVNNDETHRETMWLCHWTFDPNAVHVDDIDAGWRLMGETEQGDEVEFCVDMGYG IRVKKCGVHPLYSNNFGDETLKLLRAISSSSSLMHRRRFSQSRPRCLTIGSSKKMRGEMFYGGPSHDNLYIEWSKLRSKRLEDSTAFLLSANGEATESDN GDGSRSKDDMEWLDYCESDDDDEEGDESELYEVSEEEGDEETQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	0	1
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	1.4	0.9187
AT1G69710			Regulator of chromosome conden...		Lus10037192 [exp]	1.4	0.9090
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	7.9	0.8812
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	9.2	0.9075
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	13.2	0.8883
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	13.4	0.8895
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	13.9	0.8446
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	15.2	0.8403
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	15.9	0.8734
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	20.7	0.8839

Compare expression of checked genes

Lus10018616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.