Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32490 140 / 1e-41 AtENODL4 early nodulin-like protein 4 (.1) AT4G28365 135 / 9e-40 AtENODL3 early nodulin-like protein 3 (.1) AT4G27520 134 / 4e-38 AtENODL2 early nodulin-like protein 2 (.1) AT5G53870 134 / 7e-38 AtENODL1 early nodulin-like protein 1 (.1) AT3G20570 113 / 4e-31 AtENODL9 early nodulin-like protein 9 (.1) AT2G25060 108 / 7e-30 AtENODL14 early nodulin-like protein 14 (.1) AT5G57920 103 / 1e-27 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 100 / 1e-26 AtENODL15 early nodulin-like protein 15 (.1) AT4G30590 100 / 2e-26 AtENODL12 early nodulin-like protein 12 (.1) AT5G25090 100 / 2e-26 AtENODL13 early nodulin-like protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039852 [exp] 258 / 2e-88 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10009196 [exp] 123 / 4e-34 AT5G53870 154 / 3e-44 early nodulin-like protein 1 (.1) Lus10011158 [exp] 105 / 4e-28 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 102 / 4e-27 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10026880 [exp] 94 / 6e-24 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10014880 [exp] 93 / 2e-23 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10032111 [exp] 92 / 2e-23 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10003432 [exp] 91 / 1e-22 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10019955 [exp] 90 / 1e-22 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G011200 [exp] 162 / 3e-50 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.011G117800 [exp] 141 / 1e-40 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G398800 [exp] 139 / 1e-39 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.006G264600 [exp] 105 / 3e-28 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 103 / 8e-28 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.011G135400 [exp] 103 / 2e-27 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.006G184100 [exp] 100 / 3e-26 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.015G052000 [exp] 99 / 5e-26 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.001G419200 [exp] 99 / 9e-26 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.001G338800 [exp] 95 / 2e-24 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10018617 pacid=23180398 polypeptide=Lus10018617 locus=Lus10018617.g ID=Lus10018617.BGIv1.0 annot-version=v1.0 ATGGAATCCTTGATGGCGTTTTCCACCATGCTAACGGCGGCGGCCTTTCTATTCGTCGTGAAGTCGTCGGAAGGTTACCAATTCCACGTCGGAGGCAAAC AAGGGTGGGTCGTCGAACCCAAGGAGAAATACTCTCATTGGGCCGAACGGCTTCGTTTCCAAATTAACGACACCCTTTATTTCAAGTACGAGAAGGACAT GGATTCGGTGTTGGTGGTCAACAAGTCCCAGTACGACAATTGCAACCTGTCGACCCCGGTTCAATCGTTAACCGAAGGAAACTCGATCATCCGGTTCGAC CGGTCCGGTCCGTTCTTCTTCATCTCTGGGTTTGCTGACCAATGTAGCCGTGGTCAAAAACTGGTCGTGGTGGTGTTGTCCGAGCACCATCACAAGAAAC CCACCTCACCTCCATCACCATCTCCCAGGTCCTCCATCATGGCCCCACCTCCAGCTATCACTCCCTCGGACGATGAAGATGATACACCTTCTCCGGCGGC GGGTCCCACACAGGCTGCACCTATTAACTCGGGGGTGGGTACTACTCGGTTTTCAGCTGGTTTGACCAGGTTGGTTGGTTTGGTTGTCATGCTTGTTGGT GTTGGGTTTGTTGGGGTGGTTTGA
AA sequence Show only first row Show all	>Lus10018617 pacid=23180398 polypeptide=Lus10018617 locus=Lus10018617.g ID=Lus10018617.BGIv1.0 annot-version=v1.0 MESLMAFSTMLTAAAFLFVVKSSEGYQFHVGGKQGWVVEPKEKYSHWAERLRFQINDTLYFKYEKDMDSVLVVNKSQYDNCNLSTPVQSLTEGNSIIRFD RSGPFFFISGFADQCSRGQKLVVVVLSEHHHKKPTSPPSPSPRSSIMAPPPAITPSDDEDDTPSPAAGPTQAAPINSGVGTTRFSAGLTRLVGLVVMLVG VGFVGVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10018617 [exp]	0	1
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	3.3	0.8524
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	5.8	0.8007
					Lus10026491 [exp]	6.3	0.7414
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011824 [exp]	8.3	0.7963
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	9.4	0.7710
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	13.0	0.7894
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	16.2	0.7894
AT1G23110			unknown protein		Lus10007928 [exp]	17.1	0.7655
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	19.8	0.7945
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	24.0	0.7782

Compare expression of checked genes

Lus10018617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.