Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 75 / 3e-17 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 73 / 2e-16 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 72 / 2e-16 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G53170 69 / 3e-15 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G28370 68 / 6e-15 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT3G20310 66 / 1e-13 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT5G51190 65 / 2e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G50640 65 / 3e-13 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT1G03800 64 / 6e-13 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT5G61890 64 / 1e-12 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039857 [exp] 123 / 8e-36 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10015415 [exp] 74 / 2e-16 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 69 / 4e-15 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10043182 [exp] 69 / 1e-14 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10031526 [exp] 67 / 4e-14 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10035329 [exp] 68 / 5e-14 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10029987 [exp] 65 / 8e-14 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10032499 [exp] 65 / 5e-13 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 65 / 6e-13 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013700 [exp] 76 / 3e-17 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 74 / 8e-17 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G057000 [exp] 74 / 1e-16 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G056900 [exp] 72 / 4e-16 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047600 [exp] 72 / 5e-16 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047500 [exp] 71 / 5e-16 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.001G397200 [exp] 71 / 2e-15 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.002G043300 [exp] 69 / 5e-15 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G115600 [exp] 69 / 6e-15 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.005G219600 [exp] 68 / 1e-14 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10018623 pacid=23180515 polypeptide=Lus10018623 locus=Lus10018623.g ID=Lus10018623.BGIv1.0 annot-version=v1.0 ATGCATTACAGGGGAGTGAGGAAGCGGCCGTGGGGGAGATACGCCGCGGAGATTCGGGATCCGGGGAAGAAGACGCGCGTCTGGCTAGGAACCTTCGACA CGGCGGAGGAAGCCGCCAGAGCTTACGACAACGCGGCGCGTGACTATCGTGGGCCCCAAGTACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT CCTGTTTGTTAAGCAGAGGGAGAACGGCGGGGCTGTCTGGCTTTTCGACGGCATTCTCCGTCCGGATTTGGCGGCGGCGGCGGCGGTAGTTGCTCGACAG CAATTCTCTCTCCAGCTGGGTGGGACTTTCGGGTTGGGAACTGGTTCCCAGAGCAGCGAATCCGATTCATCCTCGGTGGTGGACTGCAAGCAACTTCCTC CTCCGGCGGCGAAATCCATGGAGCTAAACCTAGATCTTAACCTGGCGCCGCCGATGAGCCACTAA
AA sequence Show only first row Show all	>Lus10018623 pacid=23180515 polypeptide=Lus10018623 locus=Lus10018623.g ID=Lus10018623.BGIv1.0 annot-version=v1.0 MHYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDNAARDYRGPQVPXXXXXXXXXXXFLFVKQRENGGAVWLFDGILRPDLAAAAAVVARQ QFSLQLGGTFGLGTGSQSSESDSSSVVDCKQLPPPAAKSMELNLDLNLAPPMSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10018623 [exp]	0	1
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	4.6	0.8107
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	4.9	0.7958
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	9.6	0.7623
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	12.8	0.7537
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003692 [exp]	19.0	0.6908
AT1G32928			unknown protein		Lus10033221 [exp]	21.3	0.7390
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	21.6	0.7226
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	28.5	0.7109
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	29.9	0.7331
AT1G32920			unknown protein		Lus10001526 [exp]	30.0	0.7291

Compare expression of checked genes

Lus10018623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.