Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20570 179 / 2e-51 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G44190 158 / 8e-44 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT4G18020 113 / 4e-27 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G58080 86 / 1e-17 GARP ARR18 response regulator 18 (.1) AT5G59570 81 / 7e-17 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT4G16110 82 / 2e-16 GARP ARR2 response regulator 2 (.1) AT4G31920 82 / 2e-16 GARP ARR10 response regulator 10 (.1) AT2G25180 80 / 7e-16 GARP ARR12 response regulator 12 (.1) AT2G01760 78 / 1e-15 GARP ARR14 response regulator 14 (.1) AT3G16857 79 / 2e-15 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039883 [exp] 549 / 0 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 182 / 1e-52 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10011044 [exp] 115 / 8e-28 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 108 / 4e-25 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10040109 [exp] 107 / 1e-24 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 94 / 4e-20 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10041020 [exp] 83 / 1e-16 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10005340 [exp] 83 / 1e-16 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10036303 [exp] 82 / 2e-16 AT2G25180 294 / 4e-92 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015800 [exp] 221 / 2e-67 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.007G136901 [exp] 216 / 2e-65 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.001G146200 [exp] 122 / 9e-30 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 110 / 9e-26 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.010G105600 [exp] 86 / 1e-17 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G021300 [exp] 85 / 3e-17 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.006G262100 [exp] 84 / 3e-17 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.008G135500 [exp] 82 / 2e-16 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 81 / 4e-16 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 80 / 8e-16 AT4G16110 602 / 0.0 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018649 pacid=23180486 polypeptide=Lus10018649 locus=Lus10018649.g ID=Lus10018649.BGIv1.0 annot-version=v1.0 ATGCTGGCTGTATCAGTGGCGGCACCATTGGGAGTCGACGAGAGCAGCTTCCAACAAGGGAAGATGATGATGGAGGAGGTAGATAATTTTAGCGACAGAA TTTTCTGTGACGGGAACCTACTATTGATGGAGAGCATCGATTTCGACGATTTGTTCGTAGGAATCGACGATGGGGACGTGCTCCCGGGTTTGGAGATGGA TTCCGAGATTCTCGCTGATTTCTCCGAGGAGTCCGAGGTAATAATACATGACCTGGCTACCAGGATGACGGGTTTTACGGAAACAGTCGCTAATGAGGGG CACGATGTTGTTATTATTATTGGGGACGGGAAGGGTAGTAACAAGGACGAGAAGGGCACGGGAAAAGAGGAGGTGGGGCCGGCGGCGTCACCATCGTCGT CGGCCTCGGTGGTGATGAACCCGCCGGTTAGTGATGGTGTTAGATCAGGAGGTGAGAAGAGGAAGAAATCATCCACGGCTTCAAGTCATCAGTCGAACAT TGGCAGCAAGAACGATAATCAAGGGAAGAGGAAAATGAAGGTGGATTGGACGCCAGAGTTACACAGAAGGTTCGTGCAAGCAGTGGAGCAGCTAGGCGTA GATAAGGCTGTCCCTTCTAGAATCTTGGAGCTTATGGGTATCCACTGTCTCACTCGCCACAACGTCGCCAGCCACCTCCAAAAATATAGGTCACACCGGA AGCATGTACTGGCCCGTGAGGCGGAGGCGGCCAGCTGGAGCCATCGGCGGCAGATGTACGGTGCTGCCGGAGTAACATCCCATTCCAAGGGACTAGATGT CAACCACCATCATCACCACCGGAAGGTTCATCCCCACCGGCAGCTGTGGCCACATGCACCGGCGACGGTGGGGTTTCCTCCCATGCACCACCATTTGGTT AGGCCGTTACATGTGTGGGGTCATCCTCATCACCACCATCAGCCACTTTGGCACCGTAACCAACGAGTGGGTGCAACCGGAGTAGGACTAACACCGTCAA CGGGGATGGATAGCTTTCCGCAGGCGGCGGCGGCGGCTGCAGTACGGCCACCACCAACGAGATTCACTACGCCGCCGATTCTCAGCATCATCCCTCCTCC CCACGTCATGTACAAACCTGGACACGGCGTGCCTCCACCGGCGACATCGGCGTCCAGCCCAAATCAATCCTTTGACTTCCACCCGTCAAATGAAAGCATA GATGCAGTCATCGGAGATGTTTTATCAAATCCGTGGCTGCCACTTCCACTAGGGCTCAAACCTCCGGCAGTGGACACCGTTTTAGTGGAACTCCACCGCG GCGGTGGACACCGTTTTAGTGGAACTCCACTGCCAAGGAATATCTAA
AA sequence Show only first row Show all	>Lus10018649 pacid=23180486 polypeptide=Lus10018649 locus=Lus10018649.g ID=Lus10018649.BGIv1.0 annot-version=v1.0 MLAVSVAAPLGVDESSFQQGKMMMEEVDNFSDRIFCDGNLLLMESIDFDDLFVGIDDGDVLPGLEMDSEILADFSEESEVIIHDLATRMTGFTETVANEG HDVVIIIGDGKGSNKDEKGTGKEEVGPAASPSSSASVVMNPPVSDGVRSGGEKRKKSSTASSHQSNIGSKNDNQGKRKMKVDWTPELHRRFVQAVEQLGV DKAVPSRILELMGIHCLTRHNVASHLQKYRSHRKHVLAREAEAASWSHRRQMYGAAGVTSHSKGLDVNHHHHHRKVHPHRQLWPHAPATVGFPPMHHHLV RPLHVWGHPHHHHQPLWHRNQRVGATGVGLTPSTGMDSFPQAAAAAAVRPPPTRFTTPPILSIIPPPHVMYKPGHGVPPPATSASSPNQSFDFHPSNESI DAVIGDVLSNPWLPLPLGLKPPAVDTVLVELHRGGGHRFSGTPLPRNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10018649 [exp]	0	1
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	2.0	0.8717
AT5G10010			unknown protein		Lus10006744 [exp]	3.5	0.8099
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	9.5	0.8154
					Lus10034884 [exp]	10.9	0.7855
AT4G15545			unknown protein		Lus10012775 [exp]	13.0	0.7787
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	13.7	0.8067
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	14.5	0.7940
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	17.1	0.7723
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	17.2	0.7819
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	18.2	0.7829

Compare expression of checked genes

Lus10018649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.