Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 485 / 1e-169 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 484 / 4e-169 Transmembrane amino acid transporter family protein (.1) AT2G40420 366 / 3e-123 Transmembrane amino acid transporter family protein (.1) AT3G56200 358 / 7e-120 Transmembrane amino acid transporter family protein (.1) AT1G80510 314 / 4e-102 Transmembrane amino acid transporter family protein (.1) AT4G38250 64 / 1e-10 Transmembrane amino acid transporter family protein (.1) AT2G42005 61 / 8e-10 Transmembrane amino acid transporter family protein (.1) AT1G10010 47 / 2e-05 AAP8, ATAAP8 amino acid permease 8 (.1) AT2G41190 47 / 3e-05 Transmembrane amino acid transporter family protein (.1) AT5G63850 46 / 4e-05 AAP4 amino acid permease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007716 [exp] 858 / 0 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 527 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 521 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 518 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 513 / 1e-180 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 444 / 1e-153 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10042864 [exp] 391 / 1e-132 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 382 / 2e-129 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034093 [exp] 347 / 1e-114 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114300 [exp] 688 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.017G106300 [exp] 533 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 504 / 6e-177 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 393 / 2e-133 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.003G011900 [exp] 307 / 3e-99 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 301 / 5e-97 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 284 / 7e-93 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 69 / 1e-13 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 66 / 1e-11 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 65 / 5e-11 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10018652 pacid=23176180 polypeptide=Lus10018652 locus=Lus10018652.g ID=Lus10018652.BGIv1.0 annot-version=v1.0 ATGCCGACCGGCGACAGCAAACACCGCCGGAGCTCCAAGGTTCCTCTTCTCCCTCATAAACGCGACGACAGCTTCCATCAACTCGAGGCCAGCTCCGATG GCGCCTCCTTCTCTGGCGCAGTCTTCAACCTCTCCACCACAATCGTCGGAGCTGGAATCATGGCGCTTCCTGCTATTCTCAACCAATTGGGACTGATTCC TGGCCTTGTCATGATTCTGCTCGGCGCTTGGGTTACGGAGATGTCGATTAACTTGGTTTTGAGATTCGGTCGTGCTTCCAAGACAAGCACCTCCTATTCC GGAGTCGTCGCCGATGCCTTCGGCGGTTTCGGCCGCACGCTTCTTCAGATCTGCATCGTCGTCAACAACCTTGGAATGCTCATCGTTTACTTGATCATCA TCGGCGATGTATTAGCTGGAACATGGTCAGAAGGGGTCCATCACTCAGGGCTGATAGATGAATGGCTTGGTGGCCACAGCAGCCATTGGTGGACAGCTCG TTCAACCTTGTTACTTCTCGCCACTTTCCTTGTTTTGGGCCCGCTTATATCTTTCAAACGCGTTGACTGGATATCACAACCAAGGGCCAAGGCTGTAACT TCATCTTTTGTGATTTCAGATTCATTAAGATACACGTCTGCAGTCTCGGTGCTTTTGGCTATTGTATTTGTAGCAATCACGGCCGGAGTTGCAATTGTGA AGCTAGTTGAAGGAAGGATTGGAATGCCTCGTTTGATGCCCCAAGTGAATGATCAGGCGTCTTTCTGGAAACTTTTCACAACTGTGCCTGTGATTGTCAC TGCTTATATCTGTCACCATAATGTTCACCCGATAGAGAATGAGCTAAAAGATTCAACTCAGATGAAGTCCATCGTTCGAGCATCCCTTTCGCTGTGCTCA TGTGTCTATGTTGCTACCAGCTTCTTTGGAGTTCTTCTTTTTGGGGATGGGATAATGGATGATGTTCTGGCCAATTTCGACGGTGATCTTGGAGTTCCAT ATAGCTCATTGGTTGACGATGTGGTGAGGGTTAGTTATGGTGTCCATCTCATGCTCGTCTTCCCGATAGTGTTCTACTCCCTTCGCCTCAACTTGGATGG ACTCCTCTTTCCCTATGCGGTTCCCATAGCACGAGACAACAAGAGATTCTTCTCTATAACGGTAGCTCTCATGGGAATAATCTTCATGGGGGCAAATTTC GTGCCGAATATCTGGGATGCTTTTCAGTTCACGGGTGCCACATCCGCTGTTGCTGTTGGCTTCATCTTTCCAGCTGCTATTGCTCTTAGGAATTCTCATG GGATAGCGACAAAGAGAGACAAGGTAGCGGCATGGCTAATGATACTATTGGCGGTGGCGTCCAGCACAGTGGCAATTTGTAGCGATGTTTACAGCATTTT CAGCCCTGATAGTGGACTTGCTAGCTAA
AA sequence Show only first row Show all	>Lus10018652 pacid=23176180 polypeptide=Lus10018652 locus=Lus10018652.g ID=Lus10018652.BGIv1.0 annot-version=v1.0 MPTGDSKHRRSSKVPLLPHKRDDSFHQLEASSDGASFSGAVFNLSTTIVGAGIMALPAILNQLGLIPGLVMILLGAWVTEMSINLVLRFGRASKTSTSYS GVVADAFGGFGRTLLQICIVVNNLGMLIVYLIIIGDVLAGTWSEGVHHSGLIDEWLGGHSSHWWTARSTLLLLATFLVLGPLISFKRVDWISQPRAKAVT SSFVISDSLRYTSAVSVLLAIVFVAITAGVAIVKLVEGRIGMPRLMPQVNDQASFWKLFTTVPVIVTAYICHHNVHPIENELKDSTQMKSIVRASLSLCS CVYVATSFFGVLLFGDGIMDDVLANFDGDLGVPYSSLVDDVVRVSYGVHLMLVFPIVFYSLRLNLDGLLFPYAVPIARDNKRFFSITVALMGIIFMGANF VPNIWDAFQFTGATSAVAVGFIFPAAIALRNSHGIATKRDKVAAWLMILLAVASSTVAICSDVYSIFSPDSGLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38820			Transmembrane amino acid trans...		Lus10018652 [exp]	0	1
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	5.7	0.7818
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	16.7	0.8074
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	52.2	0.7743
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	64.7	0.7406
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	76.8	0.7728
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	84.1	0.7649
AT1G80700			unknown protein		Lus10002322 [exp]	85.4	0.7519
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	117.7	0.7391
AT5G11500			unknown protein		Lus10038625 [exp]	126.7	0.7426
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	127.3	0.7328

Compare expression of checked genes

Lus10018652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.