Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 357 / 5e-105 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 343 / 5e-99 transmembrane receptors;ATP binding (.1.2) AT1G27180 338 / 6e-97 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 320 / 2e-91 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 301 / 1e-84 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 293 / 3e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 295 / 4e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 294 / 2e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63870 289 / 8e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 288 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007722 [exp] 1002 / 0 AT5G36930 225 / 3e-60 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 925 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 908 / 0 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 898 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 895 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 843 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 840 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 838 / 0 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 824 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 421 / 2e-130 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 419 / 9e-128 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 414 / 9e-128 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 418 / 1e-127 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 418 / 2e-127 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 417 / 2e-127 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 421 / 6e-127 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 417 / 9e-127 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 414 / 3e-126 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 413 / 5e-126 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018658 pacid=23176299 polypeptide=Lus10018658 locus=Lus10018658.g ID=Lus10018658.BGIv1.0 annot-version=v1.0 ATGAACATACGTGAAGTTTTGATGACACTGGCGGCTGTAATGCTTCCATTTCTGATTTTCCTCTGCAACTTCGTGTTTCGAAGGAGGAACTGCAAGAGTA ATACCAATACCTCACAATCAGAATCTTCACACATTGTCGATTCTTCTGCTTCAACCTCAATTATCTCTCCCCCGGATTCAGCTCTTGCTTCCGCTTCCGA TGCTAACTTGGCACTTCCGGCCGGGGAATATGAGGTCTTTTTGAATTTTAGAGGACCAGACACCCGTCGCGAAATCACTGATGTCCTCTATCATTTTCTT GTTCGCTCCAAAGTTCGCACTTTCAGAGATGATGAGGATCTCCGGAAGGGAGAAGGAATCTGGCCAAGTTTGGTCACAGCTATTGGGGAATCCAAAATTT ATGTTGCAGTTTTTTGTCAAACTTATGCACATAGCAAATGGTGTCTCAAAGAGCTCGCTGAAATGGTTAAATGTCATAACCAAGATAAGGGCCACATCAT CTTACCCATATTCTATAAAGTCGACCCTGGAGATGTGCGGAAACAGACTGGGCCTTATGAGGAAGCACTTAAGCAACACCAAAAGACTTTTGATGATGAA ACCGTACAAAATTGGAAAAACGCTCTGAAGCAGGTTGGAGAATTGAAAGGATGGCATGTCACCGACAGGGATGGGCAGGGAGCAATAGCTGATGCTGTTT TTGAAATTATATGGTCACATCTAAGCAAAAATTACGAATTAATGACTGATGAGTTGGTTGGAATTAATGACCATGTGAGGGCTGTAGAGGAAAGACTAGA TTTAGACTCTAAAGGTGTGGCAATGGTTGGCGTCCATGGCATTGATGGTATAGGAAAGACCACTATAGCAACTGCTGTTTTCAACAAAATATGTGCTCAT TTTGATCGTTACTGCTTTGTGGAAAATGTACGAGAAATACTACAAGAAAGGGAAGGTATGATTGCTTTGCAAAATAAAATAATTTCTAGTGCAGTTAGAA AGGTATCTCCAGTTTCTAATGCCAGTGAAGGGATCCGCATGATAAGAGATAGGGTTAGCCAATACAAGGTTCTTATTGTTCTTGATGATGTGGACGAGAA GTTCAAATTCGATAGCATCTTGGGAAAGTCTGAGAACTTTGTTTCAGGAAGTAGATTTATCATCACTTCTACAAACACAAAAGTCTTGACTTTACTCAAT GGTTGCCGGCTATATGAAGTTGGAGAAATGAGTTATGGAAACTCCCTTGAACTTTTTTGCAAGCATGCATTTGGACAGGATTATCCTCCGCACGATTACA GAACTCTATCTAGGGACATTTTATCTACAACAGGAGGTCTTCCACTGACTATTAAGGTTGTAGGATCACTTTTGTTTCAAGAAGATAAAGATGTGTGGGA AGAAAAATTAGTGCGGTTACAAGAAACGCCTGAGACGGAGGTCTTAGAAAGGTTGAAGATAAGTTATGATGCACTGGAATACGAGGCAAAACAAATATTT CTCGACATCGCTTGTTTCTATGTCGGAACAGATAAAGAAATAGCTTCATACATGTGGAGTGATTGTAAATTTTATCCGATCAGCAGCATTAATGTTCTTA TCCAAAGGTCCATCATTAAAATCAGAGATAATAATGAGTTCATGATGCATGTTCAGTTTAGAGTCATGGGGAAGGCAATTATACGGGAGGAAGATATAGA ACATCCATGGATGAGAAGTAGAATATGGTCAGACGAGGATGCTTTTGAACTATTAGTTGACAGGAAGAAACTTGTCAGATTTGAGATACTTTGCGATGGA AACTCTACGGAACTTACTGGGGACTTCGAAAATCTTCTTGAGAACTTAAGATGGCTTCAATTGCACTTCCATGAAGACTCAGGTGACCGCTTAACTAACT TTCACATGAATAAACTGGTGATTCTTGATCTACGCGGTAGCGATATAACAGACGATTGGGGAGGGTGGAGACACATCAAGATGGCAAGGAAGCTAAAAGT TCTGGATCTGTCATATTGTCGTTTCATAACAAAAGTTCCCGACCTCTCCACTTATGTCAGCTTAGAGCATTTACATCTTTATGCACTGAGAGGAAGCACA GAAGACCTGAACATTGGCAATGTGAAGAACATTAAGGTGTTGAATCTCGAGAATTGTAGAATCCAAAAGATAGTGGGAGGTAACATTGGAATGCTTCAGC AGCTCCGGGAGCTAAATATCAGTTCTTGCAAGTGCGAAAACTTGGGACTATTTCTTGTCGACATCTCGACATTACCATCACTAAAGATCCTGAAAACACT AAAAGTAGTCAAGGAAAAAGCCATGGATCTTCCCGCTAGTTTGAAGGAGATCAGCACCTCATCTTCAGTTGCTAACCTTCCTGACTTGACAGACTTGGAG CACTTAAGATTTGAATATTGTGATATTGTTGTGCTCGAACTTCCAGGAGACAAGTGGTTGAAGCAATCCAAGTTGAAGTCTTTGGCAGTGCTATACGCAA CCAACATTGAAACCATTGGTCCCCAGCTGCTTCCACCATCTCTAACAGAGCTTCATCTCTCCGTTTGCCCAAAGCTTGAGAGCCTGCCAAATCTTGACAA CTTGGCAAATTTGACTGATCTGAACATCTACAGATGTTCCATGCTTCGCGAGATCGAAGGTCTTGGAGGAGGGCTGAAGTCATTGACAACTTTGAAGATA GATTATGCAGAGAGTTTGAATCATATTAACATCCTGGAAAATCTCGTCTCTCTAACTGACTTGCATCTGGAATCTTTAAACGCTATGGAAAGAATAACCA TTAATCTAGCTGCTCTGAGCAGGCTACGTAAGATAGTGATCTTGCGCTGCCCACTTCTCACAGACATATTCGGTGGCATTGATGGTGACCAAGTACACGA ATGTTTGCAAGAACTCGAAGTTGGTGGATGCACATTGATGGAGAAGTTACCCAACTTATCAAAGTTCCCAAGCTTGAGGAAGTTAGAGATTTGGGATATG AAGGGGATCGTGAAGTTGGATGGATTGGAGTCTTTGGAAGGATTACAAGTACTAGAGTTATCTGACTTACCATCTATAGAGAATTTACCTGGTCTGTCGA AGCTAAGGAAGTTGGATGCACTAATTGTGTCGGATATGCAAGGATTACGTGAGGTTGAAGGCATTGAGAACTTGGAATCTTTGGAACGAATCCTGCTTCC AGGATGCGTGTCCTTAGAGAAACTGCCTGATCTGTCTGGTTTGAAGAATTTGCAGGTATTAAACTTGCGGGAATGCTGGAAATTGAATGATCTTTCTGGT TTAAACACCTTGCAGGGCGTAGCCATTGATATGCCTGCAGAGTAA
AA sequence Show only first row Show all	>Lus10018658 pacid=23176299 polypeptide=Lus10018658 locus=Lus10018658.g ID=Lus10018658.BGIv1.0 annot-version=v1.0 MNIREVLMTLAAVMLPFLIFLCNFVFRRRNCKSNTNTSQSESSHIVDSSASTSIISPPDSALASASDANLALPAGEYEVFLNFRGPDTRREITDVLYHFL VRSKVRTFRDDEDLRKGEGIWPSLVTAIGESKIYVAVFCQTYAHSKWCLKELAEMVKCHNQDKGHIILPIFYKVDPGDVRKQTGPYEEALKQHQKTFDDE TVQNWKNALKQVGELKGWHVTDRDGQGAIADAVFEIIWSHLSKNYELMTDELVGINDHVRAVEERLDLDSKGVAMVGVHGIDGIGKTTIATAVFNKICAH FDRYCFVENVREILQEREGMIALQNKIISSAVRKVSPVSNASEGIRMIRDRVSQYKVLIVLDDVDEKFKFDSILGKSENFVSGSRFIITSTNTKVLTLLN GCRLYEVGEMSYGNSLELFCKHAFGQDYPPHDYRTLSRDILSTTGGLPLTIKVVGSLLFQEDKDVWEEKLVRLQETPETEVLERLKISYDALEYEAKQIF LDIACFYVGTDKEIASYMWSDCKFYPISSINVLIQRSIIKIRDNNEFMMHVQFRVMGKAIIREEDIEHPWMRSRIWSDEDAFELLVDRKKLVRFEILCDG NSTELTGDFENLLENLRWLQLHFHEDSGDRLTNFHMNKLVILDLRGSDITDDWGGWRHIKMARKLKVLDLSYCRFITKVPDLSTYVSLEHLHLYALRGST EDLNIGNVKNIKVLNLENCRIQKIVGGNIGMLQQLRELNISSCKCENLGLFLVDISTLPSLKILKTLKVVKEKAMDLPASLKEISTSSSVANLPDLTDLE HLRFEYCDIVVLELPGDKWLKQSKLKSLAVLYATNIETIGPQLLPPSLTELHLSVCPKLESLPNLDNLANLTDLNIYRCSMLREIEGLGGGLKSLTTLKI DYAESLNHINILENLVSLTDLHLESLNAMERITINLAALSRLRKIVILRCPLLTDIFGGIDGDQVHECLQELEVGGCTLMEKLPNLSKFPSLRKLEIWDM KGIVKLDGLESLEGLQVLELSDLPSIENLPGLSKLRKLDALIVSDMQGLREVEGIENLESLERILLPGCVSLEKLPDLSGLKNLQVLNLRECWKLNDLSG LNTLQGVAIDMPAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	0	1
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	4.5	0.8202
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	5.5	0.8075
AT4G10930			unknown protein		Lus10032402 [exp]	8.7	0.8061
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	9.0	0.7762
AT5G27860			unknown protein		Lus10020665 [exp]	13.9	0.7678
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	15.2	0.7828
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	15.5	0.7864
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	16.9	0.7556
AT4G26980			RNI-like superfamily protein (...		Lus10043110 [exp]	16.9	0.7199
AT3G28410			F-box/RNI-like superfamily pro...		Lus10029357 [exp]	20.4	0.6959

Compare expression of checked genes

Lus10018658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.