Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67190 157 / 5e-49 AP2_ERF DEAR2 DREB and EAR motif protein 2 (.1) AT1G46768 151 / 2e-47 AP2_ERF RAP2.1 related to AP2 1 (.1) AT3G50260 149 / 1e-46 AP2_ERF DEAR1, CEJ1, ATERF#011 DREB AND EAR MOTIF PROTEIN 1, cooperatively regulated by ethylene and jasmonate 1 (.1) AT2G23340 150 / 2e-46 AP2_ERF DEAR3 DREB and EAR motif protein 3 (.1) AT4G06746 145 / 7e-45 AP2_ERF DEAR5, RAP2.9 DREB AND EAR MOTIF PROTEIN 5, related to AP2 9 (.1) AT4G36900 145 / 2e-44 AP2_ERF DEAR4, RAP2.10 DREB AND EAR MOTIF PROTEIN 4, related to AP2 10 (.1) AT4G16750 99 / 2e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G71450 95 / 7e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 97 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 94 / 1e-24 AP2_ERF ATERF38 ERF family protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010043 [exp] 174 / 2e-56 AT2G23340 170 / 1e-54 DREB and EAR motif protein 3 (.1) Lus10009373 [exp] 162 / 2e-51 AT5G67190 164 / 3e-52 DREB and EAR motif protein 2 (.1) Lus10033420 [exp] 96 / 6e-25 AT1G19210 181 / 4e-58 Integrase-type DNA-binding superfamily protein (.1) Lus10009798 [exp] 93 / 4e-24 AT1G19210 132 / 1e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10038082 [exp] 94 / 5e-24 AT5G21960 155 / 3e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 94 / 9e-24 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 92 / 2e-23 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 92 / 3e-23 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 91 / 2e-22 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025200 [exp] 195 / 1e-64 AT1G46768 160 / 3e-51 related to AP2 1 (.1) Potri.002G124000 [exp] 191 / 9e-63 AT1G46768 158 / 3e-50 related to AP2 1 (.1) Potri.005G140900 [exp] 160 / 2e-50 AT5G67190 169 / 1e-53 DREB and EAR motif protein 2 (.1) Potri.007G046500 [exp] 154 / 4e-48 AT5G67190 149 / 7e-46 DREB and EAR motif protein 2 (.1) Potri.013G101100 [exp] 99 / 1e-26 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.018G038100 [exp] 97 / 4e-26 AT5G21960 100 / 5e-27 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 99 / 8e-26 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138900 [exp] 97 / 9e-26 AT5G21960 86 / 3e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.018G047300 [exp] 95 / 1e-24 AT1G19210 169 / 1e-53 Integrase-type DNA-binding superfamily protein (.1) Potri.013G100300 [exp] 93 / 2e-24 AT1G22810 140 / 5e-43 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10018727 pacid=23176288 polypeptide=Lus10018727 locus=Lus10018727.g ID=Lus10018727.BGIv1.0 annot-version=v1.0 ATGGAGGGCCGACTCTGCTGTTCCAGTGATTCAAATTCAACCTCCTCTTCCACGGCGGAGAAGCGGAAGCACTGCGGCGGAGGAGAGAAGCCGTACAGAG GAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCCGAGATTAGGGAGCCCAACAAGCGGTCCAGAATTTGGTTGGGCTCTTACTCTACCCCTATCGCCGC CGCACGTGCCTACGACACAGCCGTCTTCTATCTTCGTGGCCCCACCGCCCGCCTCAATTTCCCGGACTTGATTTACCAAGACGACCACCTCCCAAACGAC GACGTCTCCGCCGCCTCTATCCGTAAGAAAGCCACCGAGGTTGGTGCTAAAGTCGACGCCTTCCAGACCTCCCTTCACCACCACGCCGCCGCAGACGACG ACGACAGCCACGTCTCCAACACCGCCGCCGCCTCTCCCGCCGCCGCCGCCGCCAGGCCGGCCCAGCAGAAACCCGATTTGAACGAGTACCCGGAAAATTC GGACGAGGATGACGAATAA
AA sequence Show only first row Show all	>Lus10018727 pacid=23176288 polypeptide=Lus10018727 locus=Lus10018727.g ID=Lus10018727.BGIv1.0 annot-version=v1.0 MEGRLCCSSDSNSTSSSTAEKRKHCGGGEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPTARLNFPDLIYQDDHLPND DVSAASIRKKATEVGAKVDAFQTSLHHHAAADDDDSHVSNTAAASPAAAAARPAQQKPDLNEYPENSDEDDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	0	1
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	4.2	0.8548
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	4.7	0.8505
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	6.9	0.8493
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	8.9	0.8447
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	10.1	0.7524
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	10.6	0.8239
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	10.9	0.8313
AT3G15358			unknown protein		Lus10011176 [exp]	11.0	0.8416
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	12.2	0.8377
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	15.0	0.8222

Compare expression of checked genes

Lus10018727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.