Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64280 506 / 3e-170 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 490 / 5e-164 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT4G19660 390 / 9e-126 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT5G45110 378 / 6e-121 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT3G57130 145 / 7e-37 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT2G41370 144 / 2e-36 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT4G27950 93 / 4e-20 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G23750 82 / 1e-16 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT2G46310 78 / 3e-15 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT4G11140 71 / 7e-13 AP2_ERF CRF1 cytokinin response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024842 [exp] 710 / 0 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10018289 [exp] 408 / 2e-132 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 402 / 4e-130 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 372 / 5e-119 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10036200 [exp] 306 / 6e-94 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10024843 [exp] 214 / 2e-65 AT4G26120 94 / 2e-23 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 130 / 2e-31 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 128 / 6e-31 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10005149 [exp] 101 / 2e-24 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148100 [exp] 724 / 0 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.012G118500 [exp] 447 / 1e-147 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 445 / 6e-147 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 404 / 2e-132 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 383 / 5e-123 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 378 / 5e-121 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 145 / 1e-36 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 140 / 1e-35 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.015G116900 [exp] 122 / 5e-32 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.014G094500 [exp] 125 / 2e-31 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0465 [flax] [poplar] Ank PF11900 [flax] [poplar] DUF3420 Domain of unknown function (DUF3420) CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain CL0081 [flax] [poplar] PF12313 [flax] [poplar] NPR1_like_C NPR1/NIM1 like defence protein C terminal
Representative CDS sequence Show only first row Show all	>Lus10018756 pacid=23176163 polypeptide=Lus10018756 locus=Lus10018756.g ID=Lus10018756.BGIv1.0 annot-version=v1.0 ATGGATTACAGATTCGGAATCTGCGATTCGAACGACATCATCAGCAACGGAAGCAGCTCCTGCTGCGTAGAACCTCCGTCAACTTCACAGCCGGAAATCG CATCCCTCCACCGCCTTTCCCAAAACTTAGATTCAATGATAGAAACTTCGTCGCCGGAATTCGACTTCTTCGCGGACGCCAAAATCGCGGTGCGAGGGCG CGAGGTGGCGGTGCACAGATGCATTCTGTCGTCGAGGAGTCCGTACTTCAGGAACGTGCTGTCCTCGTCCTCCTCCGAGAAGAAATGCGGTGAGGTTTTT GAATTGAAAGAGCTGGCTAAGGACTACGACGTTGGATTCGAATCTCTGGCGGCAGTTCTCGGTTACTTGTACAGCGGGAGAGTGAGGGCGTCGCCGCCGG CGGGAGTTTGTGTGTGTGTGGATGATGATTGCCCTCATTTGGCCTGCCGTCCGGCGCTGGATTTCTTGGTCGAGGTTCTCTATGCTTCTTACATCTTTCA GGTTCCTGAATGGGTCGCTCTCTATCAGAAGAAACTAGTAGATGTACTAGACAAGGTATCGACCGACGACGCATTGGTGATACTCTCGGTCGCAAACTTA TGCGACAAATCTTGCGAATTGCTGCTAGCGAGATGCATCGACATGATGGTCAAATCCAACGTTGACATTGTAACTCTGGACAAGGCCCTGCCACACCACA TAGTCAAGCAAATAACAGACGCACGTTGGATGCTAAACTCGTACAAAACCCATGATGAAAAGCAAGAAATCCACCCTGACAACAAACATGTGAAGAGAAT ACACCGAGCTCTCGACTCCGACGATGTCGAGCTGGTGAGGATGCTGCTCAAGGAAGGACACACCAATCTTGACGACGCGGAGGCGCTTCACTATGCGGTC GCTTACTGTGATTCGAAGACCACGATGGAGGTCCTCGATCTCGGCCTGGCTGATGTGAATCGAACGAATTCAAGAGGGTACACGGTGCTCCACGTGGCTG CGATGAGGAAAGAGCCGAAGATAATAGTGTCTTTGCTGACGAAAGGAGCCAGGCCTTGTGCTCTGACGTCGGACGGCCGAAAGGCTCTGCAGATTGCTAA GAGACTCACTAGAGCTGCAGACTACCATAAGTACTTGACGACCGAGGAAGGTGGTAATAACAATAATAGTAAAGCTTCTTCCAAGGAAAGGTTGTGCATA GAGATACTGGAGCAGGCTGAGAGGAGGTCTCCGCTGCTCGGGGAGGCTTCAGTTTCTCTAGCCCTGGCGGGAGATGACTTGAGACGCAAGCTACTGTACC TTGAAAACAGAGTTGGACTAGCAAAGCTTCTGTTCCCAATGGAAGCCAAAGTTGTGATGGACATCACGCAACAAGACGGCACATCCGATGAATTCCCATT AGGCAACATGATCCAATCTAACAACTCTGCCGACGCGGCGCAGAGGCGTACCGTGGACTTGAACGAGGCGCCTTTCAGAATCAAAGAAGAGCTTCTCAAC AGAATGAGAGCACTCTCCAGGGCAGTGGAAGTGGGGAAGCGATTCTTCCCTCGATGCTCGGACGTGCTGAACAAGATCATGGACGACGACAACGAGCTGA CCCAGCTGGCGTGTTTGGGAAACGGTACGCCCGAAGAACGGCAGAGGAAGAGGAAGAGGTACTTGGAGCTACAGCAGTTGCTGGGAAAGGCTTTCAATGC TGATAAAGAAGAGTTCGATCGGACGTCAGCAATTTCTTCCTCGTCAGCCTCCAAATCGAAATCTGTGGACGGGATCCTGCCTCCGCCCGCCAAGAGAAGT GCTACTGAAACAGTTCCCATTTCAATTTCCCTTTTGTTTCGTCTCCTTCTCCTCCACCGCACCCCCCAAAAAATTTCCGTAATGTCCACGAACACGTCGA CACCTTCTCCGACGCCGGCGGATGTCAAGTACACAGAGCACCGGACCGTCACCAGCATGATCGTCAAGCTCCACGACCCCACGGCCAAGAAAATCGTCCG TATCTCCGTCACGGACGGAGACGCCACGGATTCCTCCGGCGACGAAAATGAACACGGTGGACGAGGAAGGACAGCAGAGGAATCAGTTCGTCTTCGTCGT CATCAGCACCAGAGAGTGAAGAAGCACATCCAGGAGATCATAATCCGAGATCGCAACGCGATGACGGATGAGCTGCCTCCTTGTAAGGAGAGTTCCGGGG AGCAGGAAATTAGGGATTGTCCCCTAATCGGGACGAAATACCGAGGCGTGCGGCGACGGCAGTGGGGGAGATGGGCAGCGGAGATTAGGGACCCGTTGAA CCGGCGGAGGATTTGGCTTGGGACGTACGACACGGCGGAGGAAGCTGCTAGGGCTTACGACGAGGCTGCAATTAGGATCAAAGGAGCCGGCGCCTTCACC AATCTGATGAAAGTGAAACCTCCAGCAGCTAATGAGAAGAAGAGATTCGTAGCATCTCCGCCGGAATCAGCGGTTTCTGGCTGTAATTCCGGCGAGGAAT CTCGCTCGTGTGGAAAGAATATGCCACAAGTTGGGGTGGAAAGCTAA
AA sequence Show only first row Show all	>Lus10018756 pacid=23176163 polypeptide=Lus10018756 locus=Lus10018756.g ID=Lus10018756.BGIv1.0 annot-version=v1.0 MDYRFGICDSNDIISNGSSSCCVEPPSTSQPEIASLHRLSQNLDSMIETSSPEFDFFADAKIAVRGREVAVHRCILSSRSPYFRNVLSSSSSEKKCGEVF ELKELAKDYDVGFESLAAVLGYLYSGRVRASPPAGVCVCVDDDCPHLACRPALDFLVEVLYASYIFQVPEWVALYQKKLVDVLDKVSTDDALVILSVANL CDKSCELLLARCIDMMVKSNVDIVTLDKALPHHIVKQITDARWMLNSYKTHDEKQEIHPDNKHVKRIHRALDSDDVELVRMLLKEGHTNLDDAEALHYAV AYCDSKTTMEVLDLGLADVNRTNSRGYTVLHVAAMRKEPKIIVSLLTKGARPCALTSDGRKALQIAKRLTRAADYHKYLTTEEGGNNNNSKASSKERLCI EILEQAERRSPLLGEASVSLALAGDDLRRKLLYLENRVGLAKLLFPMEAKVVMDITQQDGTSDEFPLGNMIQSNNSADAAQRRTVDLNEAPFRIKEELLN RMRALSRAVEVGKRFFPRCSDVLNKIMDDDNELTQLACLGNGTPEERQRKRKRYLELQQLLGKAFNADKEEFDRTSAISSSSASKSKSVDGILPPPAKRS ATETVPISISLLFRLLLLHRTPQKISVMSTNTSTPSPTPADVKYTEHRTVTSMIVKLHDPTAKKIVRISVTDGDATDSSGDENEHGGRGRTAEESVRLRR HQHQRVKKHIQEIIIRDRNAMTDELPPCKESSGEQEIRDCPLIGTKYRGVRRRQWGRWAAEIRDPLNRRRIWLGTYDTAEEAARAYDEAAIRIKGAGAFT NLMKVKPPAANEKKRFVASPPESAVSGCNSGEESRSCGKNMPQVGVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	0	1
					Lus10011136 [exp]	1.0	0.9185
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	5.8	0.9013
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	7.2	0.8687
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	7.7	0.8692
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	8.2	0.7793
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	13.7	0.8514
AT5G63460			SAP domain-containing protein ...		Lus10022457 [exp]	14.0	0.8627
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10014280 [exp]	14.2	0.8539
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	14.7	0.8575
AT1G14990			unknown protein		Lus10035021 [exp]	15.2	0.7579

Compare expression of checked genes

Lus10018756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.