Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79800 142 / 3e-43 AtENODL7 early nodulin-like protein 7 (.1) AT3G20570 96 / 4e-25 AtENODL9 early nodulin-like protein 9 (.1) AT5G14345 93 / 2e-24 AtENODL21 early nodulin-like protein 21 (.1) AT1G48940 93 / 6e-24 AtENODL6 early nodulin-like protein 6 (.1) AT3G18590 90 / 1e-22 AtENODL5 early nodulin-like protein 5 (.1) AT2G25060 86 / 4e-21 AtENODL14 early nodulin-like protein 14 (.1) AT5G53870 87 / 1e-20 AtENODL1 early nodulin-like protein 1 (.1) AT5G57920 84 / 2e-20 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 82 / 8e-20 AtENODL15 early nodulin-like protein 15 (.1) AT4G27520 83 / 5e-19 AtENODL2 early nodulin-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024846 [exp] 272 / 4e-94 AT1G79800 147 / 1e-44 early nodulin-like protein 7 (.1) Lus10037575 [exp] 152 / 4e-47 AT1G79800 127 / 4e-37 early nodulin-like protein 7 (.1) Lus10011433 [exp] 151 / 1e-46 AT1G79800 124 / 4e-36 early nodulin-like protein 7 (.1) Lus10026880 [exp] 93 / 8e-24 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 92 / 3e-23 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10014880 [exp] 92 / 3e-23 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10032111 [exp] 90 / 6e-23 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10022318 [exp] 89 / 4e-22 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10009617 [exp] 83 / 5e-20 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187700 [exp] 170 / 4e-54 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.003G050500 [exp] 159 / 1e-49 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.011G117800 [exp] 97 / 2e-24 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.011G135400 [exp] 94 / 5e-24 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.006G184100 [exp] 92 / 8e-24 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.006G264600 [exp] 89 / 1e-22 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.015G052000 [exp] 88 / 4e-22 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.018G018200 [exp] 87 / 1e-21 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.001G338800 [exp] 86 / 2e-21 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.001G398800 [exp] 88 / 7e-21 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10018758 pacid=23176199 polypeptide=Lus10018758 locus=Lus10018758.g ID=Lus10018758.BGIv1.0 annot-version=v1.0 ATGTACTCTGCTGCTGCAAAAGTGTTCAAAGTCGGCGACGATTTCGGCTGGCAACAACCATCTAACAACAACTCCCAGATTTATCCTCAGTGGGCCACCT CCAACAGATTCCAAGTCGGGGATTCCCTCTTGTTCGAGTACAAGAACGACTCAGTAGCACAAGTGGACAAATGGGGATACTACCACTGCAACATCACCAG CTCGTCAATGGCGGTTTTCGACAATGGAAGGAGCACTTTCAAGCTTGACCAGCCTGGACCTTTCTACTTCATCAGTGGCAACATCAACCACTGTCACAAC GGACAGCTTCTTCTGGTAGAAGTTATGTCAACTCACCATACTTACCATCCCACCATGGCGCCTTATCCTTCGGCCTTTCCTCCGAGTTACATGAATCCCC CGGAGGGGTCTTCATCATCATCACTAGATGATGATGATCAGCCAAACTTGGCAGCCATTGTTTCGGTTGTATCGAGTTCAGTGGCCGTTGTTCTTATTGC CACATTTGTTGCTTTGGCATGGTGTGCACCATGA
AA sequence Show only first row Show all	>Lus10018758 pacid=23176199 polypeptide=Lus10018758 locus=Lus10018758.g ID=Lus10018758.BGIv1.0 annot-version=v1.0 MYSAAAKVFKVGDDFGWQQPSNNNSQIYPQWATSNRFQVGDSLLFEYKNDSVAQVDKWGYYHCNITSSSMAVFDNGRSTFKLDQPGPFYFISGNINHCHN GQLLLVEVMSTHHTYHPTMAPYPSAFPPSYMNPPEGSSSSSLDDDDQPNLAAIVSVVSSSVAVVLIATFVALAWCAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	0	1
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	1.0	0.9186
					Lus10034724 [exp]	3.2	0.8760
AT3G22640		PAP85	cupin family protein (.1)		Lus10042615 [exp]	6.0	0.8577
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	9.5	0.8888
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	12.0	0.8356
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10019716 [exp]	12.1	0.8831
AT1G17400			unknown protein		Lus10039921 [exp]	16.1	0.8820
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	16.9	0.8101
					Lus10013172 [exp]	20.5	0.7583
AT3G63390			unknown protein		Lus10018745 [exp]	24.1	0.6738

Compare expression of checked genes

Lus10018758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.