Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17950 194 / 4e-61 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G69560 193 / 7e-60 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 191 / 9e-60 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT4G33450 188 / 6e-59 MYB ATMYB69 myb domain protein 69 (.1) AT1G73410 184 / 4e-57 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT5G17800 181 / 3e-55 MYB ATMYB56 myb domain protein 56 (.1) AT3G29020 172 / 1e-52 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G39700 134 / 2e-38 MYB ATMYB89 myb domain protein 89 (.1) AT5G67300 132 / 1e-36 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G50060 131 / 3e-36 MYB ATMYB77 myb domain protein 77 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028638 [exp] 391 / 7e-138 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10029746 [exp] 203 / 1e-63 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10031900 [exp] 194 / 1e-59 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 193 / 2e-59 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10030452 [exp] 192 / 5e-59 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 192 / 1e-58 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 182 / 1e-55 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10040239 [exp] 145 / 2e-40 AT3G55730 315 / 1e-104 myb domain protein 109 (.1) Lus10028250 [exp] 143 / 8e-40 AT3G55730 306 / 2e-101 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186400 [exp] 207 / 2e-65 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.015G033600 [exp] 202 / 1e-64 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.002G073500 [exp] 202 / 2e-63 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.012G039400 [exp] 198 / 6e-63 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.007G134500 [exp] 192 / 3e-60 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.007G106100 [exp] 192 / 6e-60 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.017G017600 [exp] 191 / 7e-60 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.008G088000 [exp] 193 / 1e-58 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 192 / 5e-58 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 188 / 1e-56 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018936 pacid=23144743 polypeptide=Lus10018936 locus=Lus10018936.g ID=Lus10018936.BGIv1.0 annot-version=v1.0 ATGGGAGATCATGAAGGCAAAGGAGGAGGAGTAACTAGTTATAATTCTTGCAACTCTTCTTCTTCATCTTCTACTCATCATAATAATAATAGTTCATCAT CGTCTTGTCCAAGAGGCCATTGGAGGCCAGCTGAAGATGAGAAACTACGGCAGCTTGTCGAAAAGTATGGTGCTCAGAACTGGAACTCCATAGCTGAGAA GCTCCATGGAAGATCTGGGAAGAGTTGTAGATTGAGATGGTTCAACCAACTCGATCCGAGGATCAATCGAAGACCCTTCACAGAGGAGGAAGAGGAGAGG TTGTTAGTTGCTCATCGTATCCACGGTAATAAGTGGGCGTTCATCTCTCGCCTCTTTCCCGGTCGAACCGATAACGCAGTCAAGAACCATTGGCACGTCA TCATGGCCCGCAAGCAGCGGGAACATTCCAAGCATAGCGACAACAAGTTTGTGCCATCGTCTAGGTTTTGCCCTACTAGCAAAACCAACACTAGCACTTG CTCACCACAACCATCATATCTTAAGGAGGCTATCAATGGTAACCACATTAGGGCATGCATTTACAATAACAAGAGTGGTTGCGGTCCGAGTATTGATCAT GCCACGTGTCGTGGGTCGAATTTGTGGAACTGGGTCGGGTGCAGAGTCATCGTTCCAAGCCGGTATGGGTATGGGTCGAAGGTTGGAGGTCATGGTAATC ACGATTATAATAACGTGATGAATGATCACAATCATGGTATCGTAAAGGATCAAAGAGTAAATGCTCGTAACGAGGAGGAAGAAGAAGAAGACAAAAGGAG GAGATCAGAAGGTGTTGCTCCTAGTTTCATTGATTTTCTTGGTGTGGGTGTTTCCTCTTCTTGA
AA sequence Show only first row Show all	>Lus10018936 pacid=23144743 polypeptide=Lus10018936 locus=Lus10018936.g ID=Lus10018936.BGIv1.0 annot-version=v1.0 MGDHEGKGGGVTSYNSCNSSSSSSTHHNNNSSSSSCPRGHWRPAEDEKLRQLVEKYGAQNWNSIAEKLHGRSGKSCRLRWFNQLDPRINRRPFTEEEEER LLVAHRIHGNKWAFISRLFPGRTDNAVKNHWHVIMARKQREHSKHSDNKFVPSSRFCPTSKTNTSTCSPQPSYLKEAINGNHIRACIYNNKSGCGPSIDH ATCRGSNLWNWVGCRVIVPSRYGYGSKVGGHGNHDYNNVMNDHNHGIVKDQRVNARNEEEEEEDKRRRSEGVAPSFIDFLGVGVSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	0	1
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	2.8	0.8945
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	3.0	0.9091
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	4.6	0.8938
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	6.5	0.8863
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	6.7	0.8881
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10009592 [exp]	8.0	0.8837
AT5G66440			unknown protein		Lus10042306 [exp]	8.2	0.8919
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035145 [exp]	10.1	0.8417
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	13.5	0.8162
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	14.4	0.8483

Compare expression of checked genes

Lus10018936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.