Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 574 / 0 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 315 / 7e-93 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 307 / 7e-90 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 303 / 1e-88 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 302 / 3e-88 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 277 / 2e-79 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 272 / 1e-77 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 271 / 3e-77 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 269 / 5e-77 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 266 / 7e-76 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028639 [exp] 1808 / 0 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 1316 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 1310 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 1057 / 0 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 934 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 555 / 0 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 505 / 8e-169 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 439 / 6e-146 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 434 / 2e-136 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 572 / 0 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 484 / 2e-156 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 485 / 4e-156 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 479 / 2e-154 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 468 / 4e-150 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 463 / 4e-148 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 463 / 6e-148 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 462 / 8e-148 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 461 / 3e-147 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 461 / 5e-147 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018937 pacid=23144679 polypeptide=Lus10018937 locus=Lus10018937.g ID=Lus10018937.BGIv1.0 annot-version=v1.0 ATGGCGGGACTGCCAGTGGACTATTTGGCACAGAAGATGGAGGATATCCTAGTGAAGGAAGCAGCTCTATTCGGAGAAGCTCGAGGTCAGGTGGAGGAGA TAAAGAAAGAGCTCATGAGCATGAGGTCATTTCTCGAGGATGCTGATGACGATCCAGAAGCTACCAAATCGAGAGCAAGGCAAACGCAGGTAGCTCAAGT CAGAGATTTGGTTTACGACGTTGAAGACATCATCGACAAGTTCATGTACCATATAAACAAGTGGAGGGGGAAGCATACGTTCGTACAGTACTTAAGAAGA CCATTTGACTTCCCTAAGTACTATTGGGAGAGGCGACAGATTGGTACCGGACTCCGGAAGATCAATGCCTTGATCCAAGCCATACCGGATAGGTATCAAC GGTTTACAGTTGATCGTAATCAAGGATCTGCTTTGAGCTCAAGCTCACCCCGTGGAGGAGGAGTGGCAGTGTTCAATCCGGAGATAGCTTTGTTTCTGAG TGAGGATGACCTTGTCGGGATTGAAGCACCGAAAGAGGAACTTACCGGATTCCTGATGAATGGAGATTTGCAACGTACTACTATTTCGGTGCTTGGCATG GGTGGCTCTGGTAAGACCACTCTCGTGGCAAATTTGTTCAACTCTGCTTCGGTGAAGCAGAGATTTGATTGTGTTACTTGGATTACTGTCTCGCAAACTT TCAACGTCGAGGAGCTGTTCCGAAGCTTGATCAAGGAAATCAACAGATCGGATGAAACGGGGGGAGGTATTCAGACTGATGATTTGAGTGCCTTGAGCTA TCGAGAGCTTTTGGAGAAGCTTGTGGCTTATTTAGAGCAGAAGAGTTATTTGGTCGTTCTGGATGATGTATGGAGTGCTGATGTGTGGAGCCAGATAAAA GTGTCTCTTCCGAATGGCCAGAAGGGTAGCCGAGTCATACTCACAACCCGAATCGATCAGATTGCTTTGCAGTCTACTTCGGAAGTCGGAAGCCACGTCT ACAATGTCAAACCGCTTGATAAGGAGAAAGCGTGGGAGCTTTTCTGTCGTAGAGCCTTTTCATCAAGTCATTCGAAAACGTGCCCTCCAGAGCTTCAGAC TATAGCAGACGAGTTTGTCGAGAAATGCAAGGGTCTTCCGCTCGCAATTGCTTCAGTGGGGGGTCTTTTGGCCTTGAAGAGATGCACAATAGGTGAATGG AAGACGGTTCTCAAGAACTTACAGTGGGAGTTGAGCAACAATCCAATGCTTCAACCTGTAACAAGGATCCTACTCTTGAGCTACAACGATCTTCCGTATC ACTTGAAATGTTGCTTCCTGTACTTTGCTATGTTCCCTGAGGACCACAAAATTTGGTGCGACAGGCTTATCAAGCTATGGATGGCGGAGGGATTTGTGGA ACCGGGTGTCAATGGAGTGTCACCAGAGGCGGTTGGTATGCGATACATAAAAGAATTGATTGGCCGGAACTTGTTCCAAGCTGCGAGCTGGGAGATGTAC GGTGACCATGGAAAGTGCAAGATGCATGATATGTATAGAGAGCTTGCTCTTACTATATCAAAAGAGGAAAATTTCTTCTCCGTATATAATGTCGGAAGTC GACCAATTACTCAAGATAACAAATTCAACCATGGTCGACGTTTATCCATTCATCAGGCGAGCAATGACTCGGAGGTTATCAACTTGCTCAAAGGTACGCG ACGTTTACGATCGTTCTTCTTGTTTGGGTCTAAAGTTCGTCCTTTATCTCTGAGCAAACTGCACTGGAAACGCAATCGGCTCCTTCGTGTGATGGATATG GAAAGCGCTCCGGTCGAAGAACTATCCGATGATATAGACACTTTGTTGAACTTGAAGTACTTGAACTTGAGCTACACTATGGTGAAGAAGCTCCCCAAGA CTGTTGGAAAGTTGCGGAGCCTTGAAAGCCTCGACATTGGAAACACCGATATCGAATCTCTTCCAAGCGAAGTCGTGAAGTGGAAGAACCTACGCCACTT GTTTGCTGGCCGGCTGAAATTCGGAAGGCTTCTAGAGTACAATAAATTGAAAGGGGTCAAAGTTCCGTCCGGTTCGGATATCAGTTCTCTTAAGAACTTG CAGACTCTCCGGGTAGTTGAAGCAAACGCAGAGATAGTCAAGCAACTGAGAACAATGATCCAACTCGTACAGCTCGGGATAACTAACGTAGAAGGCCGAG CACAGATGGAAGATCTGTGCTCCTCCCTTCGAAACATGGTTCTACTACGTTGGTTAGTCGTTGTAGTTAGCAAAGAAGATGAACTCCTCCAAATGGATTC GCTCAACGAACCATCCTCGTTGCCTAATTCGACTCCTCTGCTTCAACTTCTCGAATATCTCATCCTGTGTGGGAAGCTGAACAGCTTCCCTGATTGGATT AGCTCGCTGCAAAGCTTGACAACGATAAGATTAATCTGGAGCAGGCTACCGGTGGAAGAAGACCCGGTAGTACATCTCCAAGGGATGAACAACTTGAGGA ATGTTTGGCTTCACAATGCCTACCAAGGTACAGAGTTGAGGTTCGTCAAAGGGCTCAACAATCTAAGGGCATTGGCACTAGGCAATCTGCCCATGCTGGA GAAGCTGACGATCGGAGAAGAAGGAGGGGGAGGAGTTGTGATGCCGGACCTTGGAATTATTCTGATACGAGACTGTCCGAATCTGAAGATGATATCTGAA GGCATCAGATGTCTGTCCAAGCTCGAAGAGCTGAGGCTTGAGGATGTTTCATTTGAGCTGGTGGAGCGGATTCGTGGACCGGATCGTGCCAACTTTCGAC ACATACCTCTCATCTCGTGTAAGTATTACTCCCCGACTGGGACTTACATCAGTGAAAGGATTCTTATTGATTGA
AA sequence Show only first row Show all	>Lus10018937 pacid=23144679 polypeptide=Lus10018937 locus=Lus10018937.g ID=Lus10018937.BGIv1.0 annot-version=v1.0 MAGLPVDYLAQKMEDILVKEAALFGEARGQVEEIKKELMSMRSFLEDADDDPEATKSRARQTQVAQVRDLVYDVEDIIDKFMYHINKWRGKHTFVQYLRR PFDFPKYYWERRQIGTGLRKINALIQAIPDRYQRFTVDRNQGSALSSSSPRGGGVAVFNPEIALFLSEDDLVGIEAPKEELTGFLMNGDLQRTTISVLGM GGSGKTTLVANLFNSASVKQRFDCVTWITVSQTFNVEELFRSLIKEINRSDETGGGIQTDDLSALSYRELLEKLVAYLEQKSYLVVLDDVWSADVWSQIK VSLPNGQKGSRVILTTRIDQIALQSTSEVGSHVYNVKPLDKEKAWELFCRRAFSSSHSKTCPPELQTIADEFVEKCKGLPLAIASVGGLLALKRCTIGEW KTVLKNLQWELSNNPMLQPVTRILLLSYNDLPYHLKCCFLYFAMFPEDHKIWCDRLIKLWMAEGFVEPGVNGVSPEAVGMRYIKELIGRNLFQAASWEMY GDHGKCKMHDMYRELALTISKEENFFSVYNVGSRPITQDNKFNHGRRLSIHQASNDSEVINLLKGTRRLRSFFLFGSKVRPLSLSKLHWKRNRLLRVMDM ESAPVEELSDDIDTLLNLKYLNLSYTMVKKLPKTVGKLRSLESLDIGNTDIESLPSEVVKWKNLRHLFAGRLKFGRLLEYNKLKGVKVPSGSDISSLKNL QTLRVVEANAEIVKQLRTMIQLVQLGITNVEGRAQMEDLCSSLRNMVLLRWLVVVVSKEDELLQMDSLNEPSSLPNSTPLLQLLEYLILCGKLNSFPDWI SSLQSLTTIRLIWSRLPVEEDPVVHLQGMNNLRNVWLHNAYQGTELRFVKGLNNLRALALGNLPMLEKLTIGEEGGGGVVMPDLGIILIRDCPNLKMISE GIRCLSKLEELRLEDVSFELVERIRGPDRANFRHIPLISCKYYSPTGTYISERILID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	1.0	0.9325
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	2.8	0.9292
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10007180 [exp]	4.9	0.8861
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013996 [exp]	5.1	0.8950
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	9.5	0.9054
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	13.1	0.9130
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	14.3	0.9134
AT4G12010			Disease resistance protein (TI...		Lus10008222 [exp]	14.9	0.8372
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013997 [exp]	20.0	0.8711
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	22.8	0.8709

Compare expression of checked genes

Lus10018937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.