Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02850 139 / 1e-43 ARPN plantacyanin (.1) AT1G17800 88 / 3e-23 AtENODL22 early nodulin-like protein 22 (.1) AT2G31050 81 / 5e-20 Cupredoxin superfamily protein (.1) AT5G26330 77 / 2e-18 Cupredoxin superfamily protein (.1) AT2G26720 76 / 8e-18 Cupredoxin superfamily protein (.1) AT2G32300 76 / 1e-17 UCC1 uclacyanin 1 (.1) AT3G27200 74 / 1e-17 Cupredoxin superfamily protein (.1) AT3G17675 73 / 1e-17 Cupredoxin superfamily protein (.1) AT3G60270 74 / 2e-17 Cupredoxin superfamily protein (.1) AT2G44790 71 / 4e-16 UCC2 uclacyanin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028640 [exp] 216 / 6e-74 AT2G02850 151 / 3e-48 plantacyanin (.1) Lus10028641 [exp] 216 / 6e-74 AT2G02850 151 / 3e-48 plantacyanin (.1) Lus10041849 [exp] 128 / 4e-39 AT2G02850 130 / 5e-40 plantacyanin (.1) Lus10041848 [exp] 123 / 2e-37 AT2G02850 130 / 4e-40 plantacyanin (.1) Lus10041850 [exp] 120 / 3e-36 AT2G02850 121 / 1e-36 plantacyanin (.1) Lus10022800 [exp] 115 / 5e-34 AT2G02850 100 / 4e-28 plantacyanin (.1) Lus10028395 [exp] 111 / 1e-32 AT2G02850 107 / 2e-31 plantacyanin (.1) Lus10028396 [exp] 109 / 6e-32 AT2G02850 107 / 4e-31 plantacyanin (.1) Lus10011867 [exp] 113 / 4e-30 AT3G07060 621 / 0.0 embryo defective 1974, NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074000 [exp] 167 / 2e-54 AT2G02850 154 / 1e-49 plantacyanin (.1) Potri.001G209300 [exp] 157 / 5e-51 AT2G02850 155 / 4e-50 plantacyanin (.1) Potri.002G241500 [exp] 122 / 6e-37 AT2G02850 122 / 8e-37 plantacyanin (.1) Potri.007G104600 [exp] 88 / 2e-23 AT1G17800 94 / 3e-25 early nodulin-like protein 22 (.1) Potri.008G151000 [exp] 87 / 2e-22 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.010G089900 [exp] 85 / 1e-21 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 85 / 2e-21 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 84 / 2e-21 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 84 / 3e-21 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 81 / 2e-20 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10018938 pacid=23144648 polypeptide=Lus10018938 locus=Lus10018938.g ID=Lus10018938.BGIv1.0 annot-version=v1.0 ATGATGATGGTTCAGGGAAGAGGCAGTGCAGTGGCTGTGATGCTGATGCTGGTGATGGTGATGGTTCTAACAAATCAAGAGGCTGATGCAGCAACTACTT ACGTAGTTGGTGGGTCTGGTGGCTGGACTTTCAATGTTGCTGGCTGGCCTAAAGGGAAGGCCTTCAAAGCTGGAGACTCCCTCTTGTTCAAGTATGATCC GACGCTGCACAATGTGGTGGCGTTGAACAGAGGTGGGTACAGTAGCTGCCGGACTCCGGCGGGTTCGAAAGTGTACAAGACTGGGAAAGATCTGATCCAG CTCAAGAAGGGACTCAACTTCTTCATCTGTAACTTCCCCGGGCACTGCGAATCCGGGATGAAAGTCGCCATTAATGCTGCTTAG
AA sequence Show only first row Show all	>Lus10018938 pacid=23144648 polypeptide=Lus10018938 locus=Lus10018938.g ID=Lus10018938.BGIv1.0 annot-version=v1.0 MMMVQGRGSAVAVMLMLVMVMVLTNQEADAATTYVVGGSGGWTFNVAGWPKGKAFKAGDSLLFKYDPTLHNVVALNRGGYSSCRTPAGSKVYKTGKDLIQ LKKGLNFFICNFPGHCESGMKVAINAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02850		ARPN	plantacyanin (.1)		Lus10018938 [exp]	0	1
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	1.4	0.9645
AT2G02850		ARPN	plantacyanin (.1)		Lus10028640 [exp]	2.0	0.9574
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10042977 [exp]	3.0	0.8071
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	3.0	0.8997
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10043137 [exp]	5.5	0.7522
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	7.9	0.8228
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10042654 [exp]	8.3	0.7605
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	8.5	0.7630
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	10.2	0.8107
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	11.0	0.8560

Compare expression of checked genes

Lus10018938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.