Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 192 / 3e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 191 / 1e-50 transmembrane receptors;ATP binding (.1.2) AT1G63870 179 / 6e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63860 179 / 8e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41540 174 / 2e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 173 / 8e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 172 / 9e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 172 / 9e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 172 / 1e-44 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 171 / 5e-44 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033825 [exp] 461 / 2e-151 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 285 / 9e-83 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 259 / 3e-73 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 258 / 3e-73 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 249 / 3e-70 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 225 / 6e-62 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015453 [exp] 208 / 1e-59 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10032101 [exp] 206 / 1e-58 AT1G27170 270 / 6e-80 transmembrane receptors;ATP binding (.1.2) Lus10011104 [exp] 200 / 1e-53 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G282900 [exp] 364 / 3e-116 AT5G36930 361 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013700 [exp] 360 / 1e-114 AT5G36930 378 / 3e-117 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 369 / 1e-113 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 365 / 3e-112 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 363 / 2e-111 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G013900 [exp] 359 / 3e-110 AT5G36930 441 / 1e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 358 / 5e-110 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.006G282200 [exp] 358 / 6e-110 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G099700 [exp] 356 / 3e-109 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G014101 [exp] 348 / 3e-109 AT5G36930 435 / 1e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10018972 pacid=23149993 polypeptide=Lus10018972 locus=Lus10018972.g ID=Lus10018972.BGIv1.0 annot-version=v1.0 ATGTCTGAGAAAACATTGACTAGTGGTGCTGTGATGTTTCCTAGAGAGCTGACAGCCTCAGCTTCCTGGTCACATTACACCTACCATGTCTACTTAAGCT TGAGAGGCAAGGACGTAGGGGAAGGTTTTAGTAACCACCTATACACAGCTTTGGAGCAGGTAGGATTTTACATGTTTAGGGACGATGATGAAATTGTGCG GACAGAGGAGCTAGACATCGAGCTTCAGAAGGCGATGCACGAATCAATGTTGTCATTGATTGTGTTCTCAAAGGACTATGTATCCTCGACTTGGTGCCTT TATCAGCTTGTAAAGATTATGGACCTCAGAAGGTCTTTTCATTGCATAGTTGTGCCGATCTTCTATGTGGATCCGATGCTAGTTTCGGACCAGACAGATA GTTATGCAGCTGCATTTGCTAGTCACCAGGAACTATTCAAAGACAAGGCCGAGATATGGAAGGCCGCTCTTAGTGAAGTTTCTGATTTGGGTGGTATGGT TTTGCAGGACGGGTATCAAGCCGAGTTTGTTCAAGATGCAGTAAAGATGGTCAGGAAGAAGTTGAACCGTCCAGTTGTACACACTCCCTCCCTCTTAATC GGAATGGATTCGCATATGGCTGAAATTGATTTGTGGTTACAAGACAGTTCAGCTGCTCAGATTGGAGTAATTTATGGAATTAGTGGTATTGGGAAGACGA TGATTGCAAAGGAAGTCTTTAATCTGAATTTAGATAGATTTCAAGCTAGTTGCTTTCTTCCAAATATCAGAGAACGTTCAAAGCAGCCCAATGGCTCTGT TCTATTGCAGAAGCAGCTTCTCAACACAATTCTGTATGACCAAAATGTGAAGGTAAACAATGTAGCTGAAGGGAGTAACAAGATCAAAGATGCAATAAGT TGTAGAAGGGTTCTTATTGTTTTGGATGATGTGAATCATTTGGATCAACTGAACACAGTCATAGCATCATGGGATTGGCTATATAAGGGTAGTAGGATCA TCATAACAACTCGGCACAAACGTTTGCTGAAGGATGATAAATTTGCAACAAGTTTAGAGTTGAGGGATTGGATGAGGATGAGTCACTTAGGCTATTTAGT GAGCATGCCTTTGGACAGTATCGAGTGGAAAAGTGCATTGAATAAGATGGAAGCAATGCTTGATAGTAAAATCCTTAAGATTCTTAGAAGAGATGGCAAG GGAAATAATCGCCAAGAGTCACCAGAAGACCTGGGAGGGCGCAGCAGACTCTGGTCTCATGATGATGCCCTCAGCGCGTTGAGAGAAAATTCGGGTACAG ATGTAATTGAAGGCATCAATCTTGATTTCCAGGGTAGTATGACTGAGTCAGAACAGCAAACCCATTCTTGTGGCTGTTGTGGGGAAAGACATTTTCATGA AGATGGTCTTGATTGCAAATCCTCAGCAAAAAGGCGTGTTCTTCGGTCTCATGACGTTGAACTTGAAACAAAAGCATTTCGAAAGGCTCACAACTTAAAA CTGCTCCGTATCAACAATGCAAAGCTGAAGGGAGACTTCAAAAGTTTCCCTCGAAGTTTAATATGGCTGTTCTGGCATGGATCCTCGTTGAAATCCATAC CACCCAGTTTATATCTGGAGAAGCTTGTTGTTCTTGACATGCAAAGAAGCAGTCTAAAGCATGTCTGGAATGGCACCAGGTCCAGCAGCACCGTGTCCTC TCAGCATCCCGATTTGCCCTGTGTTCTCGATAAGGTCCGCACTTGTTCCTTTTATGGCTCTCCTACTCAAGTAGAACTAGGTTTGGATTTATCAATTGTG GGATGTTGCGATGGGATTGTCTGCATTGCTGATAAATTGCACGGAAGCGCCTCTGACATCATCCTCTGGAATCCGTCCACTTCCGAAACCATGATTCTGC CGCGTTCTCCCTTTATGGACACAAAAATGGCTGCAACAGCCAAGGACAGACAACGTTACTTTAGAGAACCGATTGGGTTTGGGTTCGACCCACTTACGGA TGACTACAAAGTGGTAAGGTGGATTAACTACATTGGAGATTTTTATGATTACATGGATCGCAGAAATTCTCAATCCGGAGTATGGGATGCTGCTGAGGTT TAG
AA sequence Show only first row Show all	>Lus10018972 pacid=23149993 polypeptide=Lus10018972 locus=Lus10018972.g ID=Lus10018972.BGIv1.0 annot-version=v1.0 MSEKTLTSGAVMFPRELTASASWSHYTYHVYLSLRGKDVGEGFSNHLYTALEQVGFYMFRDDDEIVRTEELDIELQKAMHESMLSLIVFSKDYVSSTWCL YQLVKIMDLRRSFHCIVVPIFYVDPMLVSDQTDSYAAAFASHQELFKDKAEIWKAALSEVSDLGGMVLQDGYQAEFVQDAVKMVRKKLNRPVVHTPSLLI GMDSHMAEIDLWLQDSSAAQIGVIYGISGIGKTMIAKEVFNLNLDRFQASCFLPNIRERSKQPNGSVLLQKQLLNTILYDQNVKVNNVAEGSNKIKDAIS CRRVLIVLDDVNHLDQLNTVIASWDWLYKGSRIIITTRHKRLLKDDKFATSLELRDWMRMSHLGYLVSMPLDSIEWKSALNKMEAMLDSKILKILRRDGK GNNRQESPEDLGGRSRLWSHDDALSALRENSGTDVIEGINLDFQGSMTESEQQTHSCGCCGERHFHEDGLDCKSSAKRRVLRSHDVELETKAFRKAHNLK LLRINNAKLKGDFKSFPRSLIWLFWHGSSLKSIPPSLYLEKLVVLDMQRSSLKHVWNGTRSSSTVSSQHPDLPCVLDKVRTCSFYGSPTQVELGLDLSIV GCCDGIVCIADKLHGSASDIILWNPSTSETMILPRSPFMDTKMAATAKDRQRYFREPIGFGFDPLTDDYKVVRWINYIGDFYDYMDRRNSQSGVWDAAEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	7.3	0.8812
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	7.9	0.8848
AT1G30140			unknown protein		Lus10024751 [exp]	8.9	0.9050
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10021229 [exp]	8.9	0.8705
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	9.1	0.9002
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	9.2	0.8762
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	9.8	0.8958
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	10.0	0.8936
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	11.8	0.8936
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	14.1	0.8559

Compare expression of checked genes

Lus10018972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.