Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 169 / 2e-45 GARP ARR12 response regulator 12 (.1) AT4G31920 164 / 7e-44 GARP ARR10 response regulator 10 (.1) AT3G16857 162 / 1e-42 GARP ARR1 response regulator 1 (.1.2) AT4G16110 158 / 2e-41 GARP ARR2 response regulator 2 (.1) AT1G67710 148 / 1e-38 GARP ARR11 response regulator 11 (.1) AT2G01760 125 / 2e-31 GARP ARR14 response regulator 14 (.1) AT5G58080 128 / 4e-31 GARP ARR18 response regulator 18 (.1) AT2G40970 96 / 6e-22 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT5G59570 96 / 7e-22 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT2G46790 97 / 2e-21 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036303 [exp] 649 / 0 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10005340 [exp] 163 / 5e-43 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 162 / 6e-43 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10011389 [exp] 153 / 3e-41 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 153 / 9e-41 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10016846 [exp] 153 / 2e-39 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 153 / 2e-39 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10025044 [exp] 127 / 2e-31 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10040780 [exp] 96 / 2e-22 AT3G46640 182 / 9e-57 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188000 [exp] 183 / 3e-50 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 182 / 2e-49 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G213500 [exp] 157 / 4e-41 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 156 / 9e-41 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 154 / 8e-40 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 152 / 3e-39 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G053100 [exp] 149 / 6e-39 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 147 / 5e-38 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.006G262100 [exp] 147 / 2e-37 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 140 / 4e-35 AT2G25180 364 / 2e-117 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019058 pacid=23152678 polypeptide=Lus10019058 locus=Lus10019058.g ID=Lus10019058.BGIv1.0 annot-version=v1.0 ATGGCTACTGCGGATTCCAGTGGTTCTGGTTCGTTAGGCGGCGATTTTATCCCGTCTTTATTACGGGTTTTGGTTGTTGATGACGACAAGGTTTGCCTCA GGTATCTCGAAATGCTCCTCCGCAAATGCCATTACCAAGTAACGGGGACGAATCAGGCGCTTCAAGCTCTGCAGATGCTGAGAGAGAAGAAGGGCGGGTT CGACTTGGTGATGAGCGATGTGAATATGCCGGACATGGATGGCTTTAAGCTTCTTGAACATGTTGAATTCGAAATGGATATTCCTGTGATCATGGTGTCT TCTCACAGTGAGAAGGAGCTAGTGTACAAAGGAGTAACCCATGGAGCAGTGGATTACTTACTCAAACCGGTTAGATTGGAAGAGGTGAAGAACATTTGGC AACATGTAGTAAGGAAGAGGAAGATGAATGCCAAGAAGAACAAGAGCAAATCATCGTCAAGTCCAGAGCAGAGTAATCAGGATGATAACAACAGTGGACC ACCTGATAACCATGGTACAGGCCCCCCTTCGAGTGGTAGCTCTGATCCGAATGGTGGGAAATCGAGTAAGAAGAGGAAAGACAACGAGGGAGATGAGGGA GATGAAGAAGACAACGTCAGCGACGAAAATGGTAGAGAGGAGAATGAGGAATCGGGGACTCAGAAGAAGGCTCGGGTAGTTTGGTCTAATCCACTGCATA AGAAGTTTGTTGATGCTGTTAATCAAATTGGTTTTGACAAGGCTGTCCCAAAGAAGATCCTTGATATGATGGATGTTGAAGGGCTTACTAGGGAAAATGT AGCAAGTCATCTTCAGAAATACAGGCTGTACCTGAAAAAAATGCAGGTGGAGAAAACAGAAAGGCTGCCAGAAATCGATGAACTACGGTTCATACGGGGG CTGAAAGGAGGATATCAACCTGCAGGAATATACGACTCTCCCTCTACTTTTCAAAGAAGACTACTACCATCATCTGGAATAATAATGCAGCAGCACAAGC AACCATCATCTATCTTTCCCAGTGGAGAATCTTCATTTCTGTTTCCGTCCAAGCACATCTCATTAAATAACTCCACAGGGTGTCTTGGATCATCATCTAG CAGCAATATTGGAGTAACAGCTGGTAGCTCTCCAAACCATATGATGACGCTGCAACCAGCTCCTCATAACAACATAATGACTGGAGGAGGAGGAGGAGCG TTTGGAGGTCAACAACGGCCTTTGAATCAGGGATCACCATTTGGGCTAATGCATCATGGATCCTCCCCCAACTTTGATGCGGTTCAGTTGCCAAAGTTGC CACCAACTTCTTTCGATTTCTCTACTGGTAACCTCATAGGAGGGAATGTGATTGACGATTACAGTCCAAGCATCTTAAACAGTTTAAACAACCCCTTGGG AGCAATAATGAACTCATCAGCTGCTCCTGCTTCTGGTCCTTTGAATATGTTATTTGATAATGCTATTGCTGGTGGAGTTACTCAGACTCAGAATGGGTAT AATAATAATAATAACTATGATTGTTTGGATGATATGATGACTGCATTGATCAAAAGGGAGCAAAATGAAGGATTGATCATTGATCCAGACTTGGGATTGG ATGCTTACCAGATGGGAGCATCTCCTCATTTATGA
AA sequence Show only first row Show all	>Lus10019058 pacid=23152678 polypeptide=Lus10019058 locus=Lus10019058.g ID=Lus10019058.BGIv1.0 annot-version=v1.0 MATADSSGSGSLGGDFIPSLLRVLVVDDDKVCLRYLEMLLRKCHYQVTGTNQALQALQMLREKKGGFDLVMSDVNMPDMDGFKLLEHVEFEMDIPVIMVS SHSEKELVYKGVTHGAVDYLLKPVRLEEVKNIWQHVVRKRKMNAKKNKSKSSSSPEQSNQDDNNSGPPDNHGTGPPSSGSSDPNGGKSSKKRKDNEGDEG DEEDNVSDENGREENEESGTQKKARVVWSNPLHKKFVDAVNQIGFDKAVPKKILDMMDVEGLTRENVASHLQKYRLYLKKMQVEKTERLPEIDELRFIRG LKGGYQPAGIYDSPSTFQRRLLPSSGIIMQQHKQPSSIFPSGESSFLFPSKHISLNNSTGCLGSSSSSNIGVTAGSSPNHMMTLQPAPHNNIMTGGGGGA FGGQQRPLNQGSPFGLMHHGSSPNFDAVQLPKLPPTSFDFSTGNLIGGNVIDDYSPSILNSLNNPLGAIMNSSAAPASGPLNMLFDNAIAGGVTQTQNGY NNNNNYDCLDDMMTALIKREQNEGLIIDPDLGLDAYQMGASPHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10019058 [exp]	0	1
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	6.6	0.8551
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	9.5	0.8693
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	12.4	0.8538
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	14.2	0.6964
AT4G08250	GRAS		GRAS family transcription fact...		Lus10020857 [exp]	15.7	0.7801
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036538 [exp]	23.5	0.6789
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10040101 [exp]	24.1	0.7260
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	27.7	0.8190
AT5G42785			unknown protein		Lus10002541 [exp]	28.5	0.8360
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	29.1	0.8399

Compare expression of checked genes

Lus10019058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.