Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07700 221 / 2e-69 MYB ATMYB76 myb domain protein 76 (.1) AT5G07690 220 / 7e-69 MYB PMG2, ATMYB29 PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2, myb domain protein 29 (.1) AT5G61420 220 / 2e-68 MYB HAG1, PMG1, ATMYB28 PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1, HIGH ALIPHATIC GLUCOSINOLATE 1, myb domain protein 28 (.1.2) AT5G15310 213 / 2e-66 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT1G74080 211 / 3e-65 MYB ATMYB122 myb domain protein 122 (.1) AT3G01140 212 / 5e-65 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT1G18570 207 / 7e-64 MYB HIG1, BW51B, BW51A, AtMYB51 HIGH INDOLIC GLUCOSINOLATE 1, myb domain protein 51 (.1) AT4G21440 205 / 5e-63 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G60890 203 / 9e-63 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT3G02940 201 / 2e-61 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015713 [exp] 474 / 5e-168 AT5G60890 162 / 5e-47 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) Lus10033003 [exp] 212 / 3e-65 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10039743 [exp] 204 / 1e-63 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 202 / 8e-62 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10026620 [exp] 199 / 4e-61 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10002593 [exp] 196 / 8e-60 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 196 / 2e-59 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10014784 [exp] 193 / 5e-59 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10006740 [exp] 197 / 1e-58 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086300 [exp] 217 / 4e-67 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.007G093900 [exp] 207 / 5e-64 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G118200 [exp] 207 / 2e-63 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.004G033100 [exp] 207 / 2e-63 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 207 / 2e-63 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.010G165700 [exp] 207 / 2e-63 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.005G074500 [exp] 206 / 3e-63 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.013G148600 [exp] 204 / 2e-62 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.008G089200 [exp] 204 / 3e-62 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.008G089700 [exp] 204 / 4e-62 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019085 pacid=23141785 polypeptide=Lus10019085 locus=Lus10019085.g ID=Lus10019085.BGIv1.0 annot-version=v1.0 ATGGGGAGAACACCGTGTTGCAATGTGGATGGTTTGAAGAAAGGAGCTTGGACTAGCGACGAAGACCAGAAGCTCGTCTCCTACATTCAGGAGCACGGCG AAGGCGGCTGGCGTACTCTCCCACTCAAAGCAGGACTGCAGAGGTGCGGGAAGAGCTGCAGGCTGAGATGGGCAAACTACTTGAGGCCAGACATTAAAAG AGGCGAGTTTAGCCCTGAGGAAGAACAGAGGATTATTGACCTCCATGCTTCTCTGGGCAACAGGTGGTCCGCCATTGCCAGGCACCTTCCTAAGCGAACA GACAATGAAATAAAAAATTATTGGAACACGCATCTCAAGAAACGTCTCTGTGACAACATTGATCCAACCAGTCACAACAACAACAAGACTCTTGGTCCCG CCACCTCAACTACTTCTGCTGACGTCGACCAACCATCTCATATCCACGTGTCGACCTCCTCCTCTTCGGCTCAGCTTCTCAACAAGTTAGCTGCCAAGCT GGCTCAAGAAGAAGAAGAAGGAAGGGAAAACGACGTCGTCCCTCGACCGATCAGACGGGTGGGGTCATCGAGCTCGTCAGCCAGGCTACTGAACAAGATG GCTAGCCGGCTTGCTCAGCCGATGCACTGTCTCAACACGCTCAAGTCCATCCTCTCCTCAGCTGCCGCCGAGAGCGACGGCGGCGACTACGGGAATAACA TGCAGAGGTGTGCGTCCACGTCAAGCCTCCAGTCGGAGAGCACCGCCGCCACGTCATCCAACGTGTCGAGATCCAACGACTTCAACACGGCGGATTATAA TGATGAGAACATGGCGTTCCTCGACACGTTGGACCTCGACAGCGTCCTCAATGACGACGAATGGCCACGTCAGCAGCAGCAGCAATACGGTAGTAGTAGT ACTTTGCTGTTTGGTGGGTCCCAGTACTCTTTGGATTATGACTACGGTTACGGTAGCATGGATTTGGAGCAACCGTCTACGACGTCGTCGGCAAGTAAGA GTACTAGTAACGATCACGTGGATGATTCTTGTTATGATTACGGTTACGGTGGGGAGCAGATCGGGGCCGATGATTACAATCACAGGCTTGGAGGATTATT GGACGGTGACGATGAACACGGGAGGACTTTGTGGAATTTCTGA
AA sequence Show only first row Show all	>Lus10019085 pacid=23141785 polypeptide=Lus10019085 locus=Lus10019085.g ID=Lus10019085.BGIv1.0 annot-version=v1.0 MGRTPCCNVDGLKKGAWTSDEDQKLVSYIQEHGEGGWRTLPLKAGLQRCGKSCRLRWANYLRPDIKRGEFSPEEEQRIIDLHASLGNRWSAIARHLPKRT DNEIKNYWNTHLKKRLCDNIDPTSHNNNKTLGPATSTTSADVDQPSHIHVSTSSSSAQLLNKLAAKLAQEEEEGRENDVVPRPIRRVGSSSSSARLLNKM ASRLAQPMHCLNTLKSILSSAAAESDGGDYGNNMQRCASTSSLQSESTAATSSNVSRSNDFNTADYNDENMAFLDTLDLDSVLNDDEWPRQQQQQYGSSS TLLFGGSQYSLDYDYGYGSMDLEQPSTTSSASKSTSNDHVDDSCYDYGYGGEQIGADDYNHRLGGLLDGDDEHGRTLWNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	0	1
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10003317 [exp]	2.2	0.8427
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	4.5	0.8355
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	4.9	0.8024
AT3G11640			unknown protein		Lus10021290 [exp]	6.9	0.7818
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	7.7	0.8209
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	8.7	0.8249
AT4G28310			unknown protein		Lus10033688 [exp]	8.9	0.7937
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	9.5	0.8283
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032040 [exp]	11.0	0.7824
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	15.4	0.8112

Compare expression of checked genes

Lus10019085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.