Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01140 272 / 2e-89 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G15310 266 / 9e-88 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 213 / 2e-67 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G21440 201 / 4e-62 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 199 / 7e-62 MYB ATMYB74 myb domain protein 74 (.1) AT3G02940 197 / 6e-61 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 194 / 3e-60 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 194 / 9e-60 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G54230 193 / 2e-59 MYB ATMYB49 myb domain protein 49 (.1) AT1G34670 190 / 6e-58 MYB ATMYB93 myb domain protein 93 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015712 [exp] 561 / 0 AT3G01140 269 / 5e-88 NOECK, myb domain protein 106 (.1) Lus10026620 [exp] 258 / 5e-85 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10033003 [exp] 255 / 7e-83 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10015376 [exp] 224 / 3e-71 AT5G15310 266 / 9e-88 myb domain protein 16 (.1.2) Lus10014784 [exp] 213 / 1e-67 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 213 / 3e-67 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039743 [exp] 195 / 3e-61 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 199 / 3e-60 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10019085 [exp] 196 / 6e-60 AT5G07700 239 / 3e-76 myb domain protein 76 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086300 [exp] 277 / 4e-91 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.008G089200 [exp] 269 / 4e-88 AT3G01140 289 / 4e-95 NOECK, myb domain protein 106 (.1) Potri.008G089700 [exp] 268 / 4e-88 AT5G15310 291 / 1e-96 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 267 / 1e-87 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.002G157600 [exp] 212 / 8e-67 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 209 / 1e-65 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 201 / 7e-62 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 200 / 9e-62 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 199 / 2e-61 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 198 / 4e-61 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019086 pacid=23141717 polypeptide=Lus10019086 locus=Lus10019086.g ID=Lus10019086.BGIv1.0 annot-version=v1.0 ATGGACATGTCTGCTGGGTTGAGAAGAGGTCCATGGAGCTCTGAAGAGGATCAGAAGCTCTTATCTTTCGTCCAACTTCACGGCCATGGCAGCTGGCGTA CTCTGCCCCCCAAAGCTGGGCTTCAAAGATGCGGTAAAAGTTGTAGATTGAGATGGATTAATTACTTGAGACCGGGAATCAAGAGAGGCAAATTCACTCT CCATGAGGAGCAAACTATTATCCAGCTCCATGCTCTTCTTGGCAACAGGTGGTCGGCAATAGCGGCACACTTGCCGAGAAGAACGGACAACGAAATAAAA AACCATTGGAACACTCATTTGAAGAAGCGGTTGTCTCTTATGGGGATCGACCCGACCACCCACAAATCCAAGACAGCCGCCCTCCGCCGACTCGACGGAG GAGACCCTAAGAACGCATCAACACTAAGCCACATGGCTCAGTGGGAAAGCGCCCGCCTTGAGGCTGAAGCCAGGCTGGTTCGAGAGTCGAATCTACTCCG GGTTGACCATCACCAGCAGCAGCTAAATCCTGCTCATCATCATCATCATGATCAGGTAATGCTGAACAAAATGTCTAATTCCCGGCTTGCCCCTCAAGCT CGATGCTTGGATGTACTTAGAGTATGGCAGAACCAGCATAATAATTTTGAAGGGCATGATGGTCATCATCATGATACTAATATCTATACATGGCACTCAT CATCCTCGCCGCCATGGCCGAGATTGATGGAAAGTACGTTATTGGATGGTGGTCGTGCTAGTACTACTATTAGTAGTGGTGCCAGAGGAATCAACTTAGT CGGTAAATCCGTCGCCCAAGTTAGCAATGATGACGAAGCTGGTGATGCCCTTTTCGTGGATTACTGGACTCGCAATGATGATTGCGAGTTATTCGATCTG CAGGTTGATTGGAACTCTACTAGCTGGGCAGCTATGGATCAATAA
AA sequence Show only first row Show all	>Lus10019086 pacid=23141717 polypeptide=Lus10019086 locus=Lus10019086.g ID=Lus10019086.BGIv1.0 annot-version=v1.0 MDMSAGLRRGPWSSEEDQKLLSFVQLHGHGSWRTLPPKAGLQRCGKSCRLRWINYLRPGIKRGKFTLHEEQTIIQLHALLGNRWSAIAAHLPRRTDNEIK NHWNTHLKKRLSLMGIDPTTHKSKTAALRRLDGGDPKNASTLSHMAQWESARLEAEARLVRESNLLRVDHHQQQLNPAHHHHHDQVMLNKMSNSRLAPQA RCLDVLRVWQNQHNNFEGHDGHHHDTNIYTWHSSSSPPWPRLMESTLLDGGRASTTISSGARGINLVGKSVAQVSNDDEAGDALFVDYWTRNDDCELFDL QVDWNSTSWAAMDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	0	1
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	1.0	0.9866
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	1.7	0.9820
					Lus10001031 [exp]	13.3	0.9410
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	13.8	0.9272
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	16.7	0.9826
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	17.8	0.9508
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	22.4	0.9464
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	22.8	0.9805
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009478 [exp]	24.5	0.8679
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	28.5	0.9746

Compare expression of checked genes

Lus10019086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.