Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60020 901 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 825 / 0 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 652 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 633 / 0 LAC11 laccase 11 (.1) AT5G01190 604 / 0 LAC10 laccase 10 (.1) AT5G58910 588 / 0 LAC16 laccase 16 (.1) AT1G18140 580 / 0 LAC1, ATLAC1 laccase 1 (.1) AT2G30210 552 / 0 LAC3 laccase 3 (.1) AT2G40370 542 / 0 LAC5 laccase 5 (.1) AT5G05390 534 / 0 LAC12 laccase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034439 [exp] 1109 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 1037 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10024378 [exp] 847 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 822 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10035517 [exp] 676 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 657 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 648 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10023189 [exp] 642 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 640 / 0 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G401300 [exp] 966 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 963 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 936 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 931 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.011G120300 [exp] 928 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.001G401100 [exp] 920 / 0 AT5G60020 881 / 0.0 laccase 17 (.1) Potri.006G087100 [exp] 869 / 0 AT5G60020 802 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 859 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.009G034500 [exp] 845 / 0 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 837 / 0 AT2G29130 831 / 0.0 laccase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10019122 pacid=23141738 polypeptide=Lus10019122 locus=Lus10019122.g ID=Lus10019122.BGIv1.0 annot-version=v1.0 ATGGCGGAAACCAAAATGTTGTTCCTAATAGTGATCTGTTTGGTTGGTGGTTTCGCCAATGCGGCCATAACCACCAGGCACTACAAGCTCGATGTGGTGC AAAAAAATGTGACACGGCTTTGCCACAGTAAGAGCATGGTGACTGTGAATGGACAGTTTCCAGGGCCTAGGATTGTGGCCAGGGAAGGGGACCGCCTTCT TATTGAGGTGGTCAACCATGTTAGTCACAACATCTCGATCCATTGGCATGGGATCCGGCAGCTTCGAAGTGGGTGGGCAGACGGACCTGCGTACATAACC CAGTGTCCCATCCAGACAGGGCAAAGCTATGTTTACAACTACACGATCGTAGGGCAAAGAGGCACCCTTTGGTGGCACGCGCACATCTCGTGGCTGAGAT CGACGGTTTACGGTCCCCTCATTATACTCCCAAAGCTTGGTGTCGCTTACCCTTTCAAGAAACCTTACAAAGAAGTTCCCATTGTATTTGGGGAATGGTT TAATGCAGATACTGAAGCAATCATCAACCAGGCCATGCAAACGGGTGGAGGTCCAAATGTCTCTGATGCATACACCATTAATGGACTTCCAGGACCTTTG TATAACTGCTCTGCCAAAGACACATTCAAGTTGAAGGTGAAGCCCGGAAAGACGTACATGTTGCGCCTAATCAACGCTGCCCTCAACGACGAGCTCTTCT TCAGCATTGCAAACCACACCCTCACCGTGGTGGAAGCAGACGCGGTTTACGTGAAGCCATTCGAAACAGACGTTATCCTCATAGCTCCAGGCCAAACCAC AAACGTTCTGCTGAAAGCCAAGCCGCATCACCCCAACGCCACATTTCTCATGCTGGCTTCCCCATATGCGACCGGCCAGGGCACTTTCGACAACTCAACT GTCGCTGGAATCATGGAATATGACGAATCTCCCCAACATTCTCCGATCAAAAGTCTCCCGGTCTTCAAACCAACCCTGCCTGCTCTCAACGACACCGCAT TCGCCACAAACTTCACCCTCAAGCTTCGCAGTTTGGGAACCAAACAGTTCCCTGCCAACGTTCCGCAACAAGTAGATAGGCAATTCTTCTTCACAGTAGG GTTAGGAACCAACCCTTGCCCAAAGAACCGAACCTGCCAAGGACCCAACGGGAAAATGTTCGCAGCATCAGTCAACAATGTGTCGTTCGCGATGCCAACC ACGGCCTTGCTCCAATCACATTACTCCGGTCAATCACAGGGTGTGTACTCTCCATACTTCCCCATCACCCCTTTGATTCCTTTCAACTACACGGGAACCC CACCAAACAATACAATGGTCAGCAACGGCACCAAGCTAGTGGTGTTACCTTTCAACACGAGCGTGGAGCTGATAATGCAGGACACCAGCATTCTCGGTGC TGAGAGCCACCCTCTCCATTTGCACGGATTCAACTTCTTTGTGGTCGGTCAGGGTTTCGGAAACTTCGACTCTGCTAAAGACCCTACGAAGTTCAATCTT GTAGACCCTGTCGAGAGGAATACCGTTGGAGTACCGCCCGGTGGGTGGGTCGCGATCAGGTTCGTGGCGGATAACCCGGGAGTATGGTTCATGCATTGCC ATCTGGAGGTTCACACAAGTTGGGGTCTGAAGATGGCTTGGGTTGTTTTGGATGGCAAGCTCCCTAACCAGAAGTTGCTTCCGCCACCTGCTGATCTTCC CAAGTGCTAA
AA sequence Show only first row Show all	>Lus10019122 pacid=23141738 polypeptide=Lus10019122 locus=Lus10019122.g ID=Lus10019122.BGIv1.0 annot-version=v1.0 MAETKMLFLIVICLVGGFANAAITTRHYKLDVVQKNVTRLCHSKSMVTVNGQFPGPRIVAREGDRLLIEVVNHVSHNISIHWHGIRQLRSGWADGPAYIT QCPIQTGQSYVYNYTIVGQRGTLWWHAHISWLRSTVYGPLIILPKLGVAYPFKKPYKEVPIVFGEWFNADTEAIINQAMQTGGGPNVSDAYTINGLPGPL YNCSAKDTFKLKVKPGKTYMLRLINAALNDELFFSIANHTLTVVEADAVYVKPFETDVILIAPGQTTNVLLKAKPHHPNATFLMLASPYATGQGTFDNST VAGIMEYDESPQHSPIKSLPVFKPTLPALNDTAFATNFTLKLRSLGTKQFPANVPQQVDRQFFFTVGLGTNPCPKNRTCQGPNGKMFAASVNNVSFAMPT TALLQSHYSGQSQGVYSPYFPITPLIPFNYTGTPPNNTMVSNGTKLVVLPFNTSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDSAKDPTKFNL VDPVERNTVGVPPGGWVAIRFVADNPGVWFMHCHLEVHTSWGLKMAWVVLDGKLPNQKLLPPPADLPKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	0	1
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	1.0	0.9819
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10028902 [exp]	3.5	0.9678
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	3.9	0.9680
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	4.0	0.9695
AT5G61340			unknown protein		Lus10034727 [exp]	4.9	0.9751
AT5G02640			unknown protein		Lus10025282 [exp]	5.3	0.9672
AT5G02640			unknown protein		Lus10009066 [exp]	6.6	0.9557
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	7.2	0.9607
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	7.9	0.9744
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	8.5	0.9671

Compare expression of checked genes

Lus10019122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.