Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17630 459 / 3e-161 Nucleotide/sugar transporter family protein (.1) AT1G61800 301 / 2e-99 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 294 / 1e-96 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 224 / 1e-70 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT3G01550 201 / 7e-61 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 192 / 3e-57 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT4G03950 162 / 2e-47 Nucleotide/sugar transporter family protein (.1) AT1G77610 89 / 2e-19 EamA-like transporter family protein (.1) AT1G21870 86 / 2e-18 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G12500 72 / 1e-13 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004312 [exp] 636 / 0 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10043060 [exp] 297 / 1e-97 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10011155 [exp] 294 / 8e-97 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10018356 [exp] 288 / 2e-94 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10007653 [exp] 288 / 3e-94 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10013978 [exp] 229 / 4e-71 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 227 / 2e-70 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10037085 [exp] 226 / 4e-70 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013083 [exp] 219 / 2e-67 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G071900 [exp] 459 / 7e-161 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G019900 [exp] 296 / 2e-97 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.001G420200 [exp] 289 / 8e-95 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 283 / 2e-92 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G048900 [exp] 232 / 8e-74 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 235 / 1e-73 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.012G082100 [exp] 228 / 7e-71 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.011G057800 [exp] 228 / 1e-70 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.015G077900 [exp] 211 / 3e-64 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 206 / 2e-62 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10019209 pacid=23141319 polypeptide=Lus10019209 locus=Lus10019209.g ID=Lus10019209.BGIv1.0 annot-version=v1.0 ATGATGTCACTCAATCTCACTCACTCTCCCGCCGTCCCCTTCTCCACTTCCGCCGCTGTCAACTCCCGCCGTCAATCCACCTCCGTCTCTCCTCCACAGT CCTCATTTCCCTCTCTCAGAAGTAGCCGCCTCCTCCTCACCAACCTCCCCAACAATGGCGGTCCATCCAGATCCACTCTCAGATCTCACCTCCTCATCCC CAAATCCGCTTCAGCAGGAAGCGGAGCAGAACCAGCACCATCACCGGATTCCGATTCCGAGTCCCTGAAGAGGAAGCAAACCCTGAAGCTCGCCACAGCA TTCGGCCTCTGGTACTTCCACAACATCATCTTCAACATCTGCAACAAAAAGGCTCTCAACGTATTCCCCTATCCATGGTTCCTCGCCACTTTCCAGCTCT TCGTCGGCTGCCTATGGATGCTAGTCAACTGGTCAGTCAAACGTCAATTTCCCCAAATCCCTAAAGGCTTCTTCGCCGCTCTTTTATTCCCCGCCTTATT CCACACAATCGGACACATTTCGGCCTGCGTTTCGTTCTCCAAAGTCGCCGTTTCGTTCACTCACGTCATCAAATCGGCAGAACCAGTCTTCTCCGTCATC TTCTCATCTTTCCTCGGCGAGATCTATCCTCTCAAAGTCTGGCTGTCGATCCTCCCGATCGTGTTTGGTTGCTCGTTAGCTGCAGTAACTGAAGTCTCGT TCAATTTAGGAGGGCTTTCTGGTGCTATGATCAGTAATTTCGGATTCGTCCTGAGGAACATTTATTCCAAAAAGAGTCTGCAGAATTTTAAAGAAGTCGA TGGATTGAATTTGTATGGGATGATTAGCTTCGTCTCATTGGTGTATTTGCTTCCCGTTGCGGTGTTTGTAGAAGGGTCGCAGTGGATGCAGGGGTATCGT AATGCGATTGTGGCTGTTGGGTCGAATCCGATGGATTTTTACTCGATGGTTTTGTGTTCTGGGATATTTTATCATCTGTATAACCAATCATCTTACCAGG CGCTTGATGATATAAGTCCGCTGACGTTTTCTGTTGGGAACACGATGAAGAGGGTTGTGGTGATTGTTGCTACTGTGTTGTTCTTTAGGAATCCGGTGAA GCCGCTGAATGCTCTCGGATCGGCCATTGCGATTTTCGGGACGTTCTTGTACTCTCAGGTCACTGCTAAGAAGAAGAAGAGCAGCTAA
AA sequence Show only first row Show all	>Lus10019209 pacid=23141319 polypeptide=Lus10019209 locus=Lus10019209.g ID=Lus10019209.BGIv1.0 annot-version=v1.0 MMSLNLTHSPAVPFSTSAAVNSRRQSTSVSPPQSSFPSLRSSRLLLTNLPNNGGPSRSTLRSHLLIPKSASAGSGAEPAPSPDSDSESLKRKQTLKLATA FGLWYFHNIIFNICNKKALNVFPYPWFLATFQLFVGCLWMLVNWSVKRQFPQIPKGFFAALLFPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVI FSSFLGEIYPLKVWLSILPIVFGCSLAAVTEVSFNLGGLSGAMISNFGFVLRNIYSKKSLQNFKEVDGLNLYGMISFVSLVYLLPVAVFVEGSQWMQGYR NAIVAVGSNPMDFYSMVLCSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVATVLFFRNPVKPLNALGSAIAIFGTFLYSQVTAKKKKSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	0	1
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	3.0	0.9080
					Lus10006349 [exp]	3.6	0.8684
AT2G04280			unknown protein		Lus10041091 [exp]	3.9	0.8951
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	4.5	0.8892
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	6.0	0.8999
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	7.7	0.8649
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	10.5	0.8526
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	11.0	0.8806
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	12.2	0.8904
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	12.5	0.8860

Compare expression of checked genes

Lus10019209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.