Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 441 / 1e-150 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G49950 151 / 1e-40 GRAS GRAS family transcription factor (.1) AT2G04890 136 / 4e-35 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 131 / 1e-32 GRAS SCL5 scarecrow-like 5 (.1) AT1G21450 130 / 4e-32 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 128 / 9e-32 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G13840 123 / 3e-30 GRAS GRAS family transcription factor (.1) AT5G17490 120 / 4e-29 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 120 / 5e-29 GRAS RGL1 RGA-like 1 (.1) AT3G03450 117 / 5e-28 GRAS RGL2 RGA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011542 [exp] 719 / 0 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 498 / 5e-174 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 476 / 4e-165 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 353 / 1e-116 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10014852 [exp] 145 / 4e-38 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10018498 [exp] 144 / 1e-37 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10039709 [exp] 144 / 1e-37 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10011076 [exp] 138 / 2e-35 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10016596 [exp] 131 / 1e-32 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063300 [exp] 463 / 2e-159 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G019900 [exp] 378 / 5e-127 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 370 / 1e-124 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 162 / 2e-44 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G119000 [exp] 154 / 2e-41 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 137 / 1e-34 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.001G361700 [exp] 137 / 1e-34 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G168800 [exp] 134 / 1e-33 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.002G073400 [exp] 134 / 1e-33 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G145600 [exp] 131 / 4e-33 AT3G49950 521 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10019281 pacid=23141358 polypeptide=Lus10019281 locus=Lus10019281.g ID=Lus10019281.BGIv1.0 annot-version=v1.0 ATGGATACATTGTTCAGATTGACTAATCTCCAACAATACTACAACTACCAAGAACAACAACAATCTGATCACTCTTTCACTTCAACCACCACCACCACTA GCTCCCGCTCCTCCTCCCATCACTACCCTTCTGCCGCCGCCGCCGCAGCGTACACCGTCTACGACAGCCATCCTTACTATCAATACCAGCAGCAAGCAGC CGGCGGAGGATTCCATCAAGACGACGTCGTTTCCGTCCAAGAATGCTTCAACAATACCAACAACAACTCTTTCATGGATGAAGACGACTTCATCTCCTCC TCCTCCACCTCCAAACACCCTTCCCCTCCTCACCAAAATTACTACCCTGCCCCTGCCCCTCCTCCCGCCCCGGTTAATGAAACGGTGCCGTTTGACTTCT CCAAGCCGGAATGGGCCGGAACCATCTTACTAGACGCGGCACGTGCGATTGCCACGGGGGACAGTCACCGGTTGAACCACATAATGTGGGTACTCAACGA AGTCGCGTCGCCGTACGGCGACCGCGACCAGAAGCTGGCGTCTTACTTCCTCCAGGCGATATTCAGCCGGATGACGAACTCCGGCCGGCGATCTCTCCGG TCGATCTCCTCCGCCTCCGATAAATCCTCGTCATTCGACTCTACACGTAAGCTTCTCCTCAAATTTCAAGAAGTCTCCCCCTGGACCACTTTCGGACACG TGTCGTCCAACGGAGCCATCCTCGAATCCGTGGGGTCCCACCCGAAAATCCACGTCATCGACTTCAGCAACACGTTTTGCACCCAGTGGCCTACTTTCCT CGAATCCCTCGCCACCCGCGCCGACGTTGTCGACACACCTCACCTCCGTCTGACCACCGTGTCCGCCGCCTCTGGCGGCGGGGCCGCCCGTGTGATGAAG GAGATAAGCACCCGGATGGAGAAATTCGCCAGGCTGATGGGAGTACCGTTCAAATTCGATGTTATCCACCACTCTGGCGACTTGTCGGAGCTAGATTTCG GTAAGCTGAGGGTGCAGGATGACGAGGCAGTGGCTATAAACTGCGTGGGATCACTCCGTTCGGTGTCGCCTGCATTGAACAGAAGGAACTATGTTGTGTC AAGATTTAAAAATTTGCGGCCGAGGATTGTGACGGTGGTGGAGGAAGAGGCGGATTTCGTCGCCGACGGTGATTTTGTGAGGGGCTTTGAAGAGTGGTTG AAGTGGTTTAGGGTTTACATGGAGTGTTTGGAGGAGAGCTTTCCGAGGACAAGCAACGAGAGGCTGATGCTGGAGAGGAGAGCCGGGAGGGCGATTTTGG ACCTGGTGGCGTGTCCGGTGGAAGAGTCTACGGAGCGCAGGGAGACGGCGGAGCGGTGGTCGACGAAGTTGGGTCGGAGCGGGTTTGGTGGAGTTGGGTT CAGCGAGGAGGTTTGTGATGATGTGAAGGCGTTGTTGAGGAGGTATAAGGATGGGTGGTCGATGAGACAGAACGACGGCGGCGGAGGAATGTTCTTGTGT TGGAAGGAACAGCCGGTGGTTTGGGCAAGTGCATGGAGGCCTCTTGATGATTGA
AA sequence Show only first row Show all	>Lus10019281 pacid=23141358 polypeptide=Lus10019281 locus=Lus10019281.g ID=Lus10019281.BGIv1.0 annot-version=v1.0 MDTLFRLTNLQQYYNYQEQQQSDHSFTSTTTTTSSRSSSHHYPSAAAAAAYTVYDSHPYYQYQQQAAGGGFHQDDVVSVQECFNNTNNNSFMDEDDFISS SSTSKHPSPPHQNYYPAPAPPPAPVNETVPFDFSKPEWAGTILLDAARAIATGDSHRLNHIMWVLNEVASPYGDRDQKLASYFLQAIFSRMTNSGRRSLR SISSASDKSSSFDSTRKLLLKFQEVSPWTTFGHVSSNGAILESVGSHPKIHVIDFSNTFCTQWPTFLESLATRADVVDTPHLRLTTVSAASGGGAARVMK EISTRMEKFARLMGVPFKFDVIHHSGDLSELDFGKLRVQDDEAVAINCVGSLRSVSPALNRRNYVVSRFKNLRPRIVTVVEEEADFVADGDFVRGFEEWL KWFRVYMECLEESFPRTSNERLMLERRAGRAILDLVACPVEESTERRETAERWSTKLGRSGFGGVGFSEEVCDDVKALLRRYKDGWSMRQNDGGGGMFLC WKEQPVVWASAWRPLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	0	1
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10011542 [exp]	2.0	0.8368
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	2.0	0.8396
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	2.8	0.8285
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	4.6	0.8328
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	6.3	0.8217
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	12.0	0.7672
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	12.6	0.8009
AT3G60410			Protein of unknown function (D...		Lus10010984 [exp]	15.5	0.7260
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	18.5	0.8130
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	18.5	0.7616

Compare expression of checked genes

Lus10019281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.