Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 314 / 3e-103 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 270 / 7e-87 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT2G28550 249 / 1e-77 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G60120 149 / 8e-40 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT5G57390 141 / 2e-36 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 140 / 6e-36 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 138 / 3e-35 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 135 / 3e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G37750 137 / 4e-35 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 134 / 6e-34 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009374 [exp] 540 / 0 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 331 / 7e-110 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 307 / 4e-99 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10026477 [exp] 250 / 3e-79 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 252 / 1e-77 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 247 / 4e-76 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10015055 [exp] 243 / 5e-75 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10018124 [exp] 241 / 2e-74 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10036141 [exp] 218 / 6e-65 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046200 [exp] 310 / 5e-100 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 300 / 2e-96 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.008G045300 [exp] 259 / 6e-81 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 253 / 1e-78 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 250 / 2e-77 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.010G216200 [exp] 214 / 5e-64 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.001G018400 [exp] 143 / 3e-37 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.017G078600 [exp] 140 / 4e-37 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G205700 [exp] 142 / 7e-37 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 139 / 2e-35 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10019331 pacid=23141424 polypeptide=Lus10019331 locus=Lus10019331.g ID=Lus10019331.BGIv1.0 annot-version=v1.0 ATGTGGGATTTGAACGACTCCCCAGATGATCGGAGGAAGGAGGAAGATACTAGTTTCTACAAGGGGAAGAATTCCATGGTCGGATCCGTTTCCAATTCCA GCTCCTCCGCCGCCGCCGCCGACGGATCGGAGGAGGAGGATGAGGATTTGGTCACTCGACAGTTCTTCCCGATGGACGCCGCTGTCTCCGCCGGCGACAG CGGCGGAGGAAGCGGAGAAATCGGGTTTCCTCGGTCTCACTGGATGGGAGTGAAGTTCTGCCAATCGGAATCTCCGGCATCAGCGGCGGCGGAGGTGGTT CAGCCGATGAAGAAGAGCAGGAGGGGACCACGGTCGAGGAGCTCGCAGTACAGAGGCGTCACCTACTACCGGCGAACCGGCCGCTGGGAATCACATATAT GGGATTGCGGGAAGCAGGTCTATCTGGGTGGATTCGACACTGCACATGCAGCAGCGCGTGCATACGATAGAGCAGCGATTAAATTCCGAGGAGTAGAGGC TGATATTAATTTCACCATTGAAGACTATGAGGACGATCTCAAACAGATGGGGAACTTGACGAAGGAGGAGTTTGTGCACGTGCTAAGGCGACAGAGCACG GGGTACCCGAGAGGGAGTTCCAAGTATCGGGGAGTCACTTTGCACAAGTGTGGCCGGTGGGAGGCTCGTATGGGTCAATTTCTCGGCAAAAAATATGTTT ATTTGGGATTGTTCGACACCGAGGTCGAGGCAGCAAGGGCGTACGACAAGGCCGCGATCAAGTGCAATGGCAAGGATGCTGTGACGAATTTCGATCCAAG CATTTACGAAGATGAACCGGGCAACACCACCACCACCACAAACTCCCCTTCTGATCACAATCTTGATTTGAGTTTAGGGAATTCTGGTAATTCCCCTAGA GAGTCATTCAACAGCCCGAGAAGTACGGCCCCTCTTGGAGTCGATCCAAGGCGAAATCCGGGATTAAGACCTCAGCAGCTGATGATCAACCCTTATAGAA GCGATCAGAACCATGAAGATCAGCAACAACAAAGCAACGAGATGGAAGCAATTTCGACTTCATTCCACCAACCTCCACCTCATTTCAACTCTTTGAATTT TCAGCTTGGAAGCAGCAGTAGCAACAACGCAGGAGGAGTCGGAGGAGGAAGAATCGGCAGTGAACTTTCGTTATCTCCAAGTGATTATCATCTGCATCAG CATCAATATCAACATCAACAATGGCAATCGTCAAGAGGAGCTAATAATACGAATCAAACTGCTTCTCCTCCGAATCAACAACAACAACAACAACAACAGA TCATGTTTGGAAGTGCAGCATCATCAGGATTCCCAAATCATCAGAGCCATAACAACACCAGAAATGGGTTCCATTACTCTCTCTTCAGACCCCTTGATTA A
AA sequence Show only first row Show all	>Lus10019331 pacid=23141424 polypeptide=Lus10019331 locus=Lus10019331.g ID=Lus10019331.BGIv1.0 annot-version=v1.0 MWDLNDSPDDRRKEEDTSFYKGKNSMVGSVSNSSSSAAAADGSEEEDEDLVTRQFFPMDAAVSAGDSGGGSGEIGFPRSHWMGVKFCQSESPASAAAEVV QPMKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFTIEDYEDDLKQMGNLTKEEFVHVLRRQST GYPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYEDEPGNTTTTTNSPSDHNLDLSLGNSGNSPR ESFNSPRSTAPLGVDPRRNPGLRPQQLMINPYRSDQNHEDQQQQSNEMEAISTSFHQPPPHFNSLNFQLGSSSSNNAGGVGGGRIGSELSLSPSDYHLHQ HQYQHQQWQSSRGANNTNQTASPPNQQQQQQQQIMFGSAASSGFPNHQSHNNTRNGFHYSLFRPLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10019331 [exp]	0	1
					Lus10008493 [exp]	10.0	0.6725
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	12.6	0.6875
AT1G48170			unknown protein		Lus10022781 [exp]	19.4	0.6655
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	21.9	0.6532
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	31.1	0.6548
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10027633 [exp]	46.6	0.6566
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	51.6	0.6497
AT5G04347			Plant self-incompatibility pro...		Lus10022824 [exp]	57.6	0.6499
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	60.0	0.6330
AT1G42430			unknown protein		Lus10021819 [exp]	64.2	0.6420

Compare expression of checked genes

Lus10019331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.