Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 400 / 9e-135 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G49950 170 / 1e-47 GRAS GRAS family transcription factor (.1) AT2G04890 144 / 4e-38 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 142 / 2e-36 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 140 / 2e-36 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G03450 140 / 5e-36 GRAS RGL2 RGA-like 2 (.1) AT3G13840 137 / 4e-35 GRAS GRAS family transcription factor (.1) AT1G21450 137 / 1e-34 GRAS SCL1 SCARECROW-like 1 (.1) AT5G41920 134 / 2e-34 GRAS GRAS family transcription factor (.1) AT1G66350 127 / 1e-31 GRAS RGL1 RGA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025200 [exp] 388 / 3e-131 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10012089 [exp] 388 / 1e-130 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 387 / 1e-129 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 384 / 1e-127 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10014852 [exp] 155 / 6e-42 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10039709 [exp] 154 / 4e-41 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10011076 [exp] 149 / 1e-39 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10018498 [exp] 148 / 4e-39 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10006322 [exp] 147 / 1e-38 AT1G63100 588 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G019900 [exp] 544 / 0 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 532 / 0 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 414 / 2e-140 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G186500 [exp] 163 / 8e-44 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 162 / 2e-43 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.007G119000 [exp] 155 / 4e-42 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.017G041500 [exp] 155 / 5e-42 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G053500 [exp] 146 / 1e-38 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 146 / 2e-38 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.001G409500 [exp] 146 / 6e-38 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10019361 pacid=23163237 polypeptide=Lus10019361 locus=Lus10019361.g ID=Lus10019361.BGIv1.0 annot-version=v1.0 ATGGACATAACTCTCAATTTCCCAACAAAAGACAACCACCACACTTTCTTCCCTTCCTCTGATGACCCCAACCCAAACGCCACTACATCCCGGGGAAGAT CATCCACCGATTCCCTCGACCCAGCAGCCGCCGCCGCTAACAACAACAAGAGCGACAAATGGGCGGCTCCATTGTTAAGAGAGTGCGCGCGTGCGATCGC TAACAAGGACACTCCTCGGATCCACCATCTCCTTTGGATGCTCAACGAGCTCGCTTCCCCATACGGAGACTCCGAACAGAAGCTAGCAGCCTACTTCCTC CAAGCCCTCTTCTGCAAGGCTACCCGCTCCGGTCCACGCTGCTTCCGCACCTTGACCTCCGTCGCCGACAAGAGCCACAGCTTTCACTCCGCAAGAAAAC ACATCCTCAAGTTTCAGGAGGTTAGCCCTTGGACCACCTTCGGCCACGTAGCTGCCAACGGCGCCATCCTCGAGGCCCTCGACGGAGAACCCAGGCTCCA CATAATCGACATCAGTAACACCCTCTGCACCCAGTGGCCCACTTTGCTCGAGTCCCTCGCCACGCGCCACGACGACACCCCTCACCTTAAGCTCACCGTC GTGGTCCCTGCAGCCGCCGAAAGGGCTTCTGCGGTGATCAAAGAGATAGGGCAGAGGATGGAGAAGTTCGCAAGGCTGATGGGGGTGCCCTTCGAGTTCC ACGTCGTCACGGGTGTGAATAAGCTGACGGAGCTTACTAAGGAAGCCCTGTTAATGGATAACGGTGAGGCTGAGGCGGTGGCAATCAACTGCATGGGAGC GATGAGGAAGGTGGAGGTGGAGGAGCGAGGGACGGTGATAGGGAAGATGTTCCGATCATTGTCGCCGAGGGTGGTGACGGTGGTGGAGGAGGAAGCGGAT TTCGTGGCTGGGGGGGATTACATAAATTGCTTCGAGGAGTGTCTGAGGTACTATACGGTATATTTGGAGATGTTAGATGAGAGCTTTGCGGCAACAAGCA ACGAAAAGTTGATGCTGGAGAGGGAGAGCGGGAGGAACATGGTTAGGGTGTTAGGGTGTGAAGACGAGGATGATGATGTACTTGTTGGTAATAAAGATTC AGCTGATAGAGAGACTACTACTGGTATTGGTAGTAGTGGTGCAGTTGTGATGGGTGACTGGGATAAGAAGGAGAGAGGGAGGCAGTGGAGTGGAAGAATG AGGGAAGGTGGCTTCTCTCCGGTAGGATTCAGTGATGACGTGATTGATGATGTCAAAGCTTTGCTCAAGAGGTATCGCCCTGGCTGGTCCCTTGTCAACA ACAACAACAACAACAATAAGCAGCAGCAGCCGGCGGAAGGACTGCAAAACGACCATGATAACAGTAATGATGATGATCATCATCATCTGTTTCTTAGTAA TAGTAATAATAATCAGAGTACTGAAGTGGCAGCGGCGCCTGGTCTTTTCTTGACATGGAAGGATGAACCTGTTGTTTGGGCTTCAGCTTGGAAACCTTAG
AA sequence Show only first row Show all	>Lus10019361 pacid=23163237 polypeptide=Lus10019361 locus=Lus10019361.g ID=Lus10019361.BGIv1.0 annot-version=v1.0 MDITLNFPTKDNHHTFFPSSDDPNPNATTSRGRSSTDSLDPAAAAANNNKSDKWAAPLLRECARAIANKDTPRIHHLLWMLNELASPYGDSEQKLAAYFL QALFCKATRSGPRCFRTLTSVADKSHSFHSARKHILKFQEVSPWTTFGHVAANGAILEALDGEPRLHIIDISNTLCTQWPTLLESLATRHDDTPHLKLTV VVPAAAERASAVIKEIGQRMEKFARLMGVPFEFHVVTGVNKLTELTKEALLMDNGEAEAVAINCMGAMRKVEVEERGTVIGKMFRSLSPRVVTVVEEEAD FVAGGDYINCFEECLRYYTVYLEMLDESFAATSNEKLMLERESGRNMVRVLGCEDEDDDVLVGNKDSADRETTTGIGSSGAVVMGDWDKKERGRQWSGRM REGGFSPVGFSDDVIDDVKALLKRYRPGWSLVNNNNNNNKQQQPAEGLQNDHDNSNDDDHHHLFLSNSNNNQSTEVAAAPGLFLTWKDEPVVWASAWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019361 [exp]	0	1
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	3.6	0.9376
AT1G11655			unknown protein		Lus10002065 [exp]	4.5	0.9263
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	6.6	0.9346
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	8.1	0.9293
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	10.7	0.9236
					Lus10018643 [exp]	11.7	0.9279
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	13.7	0.9163
					Lus10003550 [exp]	14.1	0.9197
					Lus10033359 [exp]	16.7	0.9174
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	18.4	0.9168

Compare expression of checked genes

Lus10019361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.