Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15990 702 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 637 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 547 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT1G22150 508 / 9e-172 SULTR1;3 sulfate transporter 1;3 (.1) AT4G08620 504 / 2e-170 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT4G02700 496 / 2e-167 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G78000 483 / 4e-162 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 466 / 1e-155 SULTR3;5 sulfate transporter 3;5 (.1) AT5G10180 424 / 6e-139 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 421 / 7e-138 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043247 [exp] 1152 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 693 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 692 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 612 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 611 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10035896 [exp] 587 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 540 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 536 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 523 / 1e-177 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056200 [exp] 693 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 683 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 648 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 631 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.002G049500 [exp] 555 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 552 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 550 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 526 / 5e-179 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092500 [exp] 503 / 5e-170 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G167300 [exp] 501 / 7e-169 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10019389 pacid=23181516 polypeptide=Lus10019389 locus=Lus10019389.g ID=Lus10019389.BGIv1.0 annot-version=v1.0 ATGGTGACGACACCACCAACAGAGAAACATGACGAACATCATCATCATCATCACCAAAATCACACATCCATAGCCTCAGCCTCTGATTTCCACACCCCTC TAAGACTTTCAATTGAAACCCCTCGAGCACCAAATTTCTCAGGGAACCAACAATTACCAAAAATCATTGACTACGATTCTTCCCATCAAGATCAAACTTC CATTCTCATTCCTAACAATGCCACACTTCTCGACCATCATGATTTCCCGATGGGATCGCCGTCGGCAGGGATTAGTACTAATAAAAACGGGAATAGTTTT AACAACCATGTTGAGATACACGATGTGTGCCACCCGCCTCATGTTTCGACGTGTGACAAGTTCAAGGCGAGACTGCACGAGATTTTCTTTCCTGAAGACC CTTTCCATGTCTTCAGGAAGAAGGATCAAACTCTTGCTATGAAGTTCTTCAAGGCTATCCAGTATGTCTTTCCTATAATCGGATGGTTAAGAAGTTATGA TCTCGATATGTTTCGATCTGATGCCATAGCCGGTCTCACCATTGCAAGCTTGGCAATCCCTCAGGGTATCAGTTATGCCAAACTTGCAAACCTGCCAGCA ATAATTGGACTATATTCAAGCTTTGTGCCACCACTGATATATGTGGTTCTGGGGAGTTCAAGACATCTAGGGATTGGTCCTGTCTCAGTTGCATCTCTAG TCATAGGTTCAATGTTAAGTGAATCGGTTTCTCCTGATACACAAACAGAACTGTATGTTAGCCTTGCATTCACTGCTACCCTTTTTGCTGGTTTGCTCCA AGCTGGTTTGGGCATTTTTAGGTTAGGGTTCATCATTGATTTCCTATCAAAGGCAACTTTAACCGGGTTCATGGCTGGAGTAGCAGTGATTGTGATCCTC CAACAGCTCAAAGGACTGTTTGGAATTGTACATTTCACCAAACAAATGCAGATCATCCCTGTTCTGAAATCCGTCATCAATGAAGAGAAAGAGTGGAGAT GGGAGACTGTGGTGATATGTGTTTCCTTCTTGGTAATCCTGTTAATCGCCAGAAATATTAGTGCAAGAAGGCCAAAGCTTTTCTGGGTATCTGCACTTGC TCCACTAACTTCAGTTATCATCTCAACTGTCATCATGTTCTTGTTCAAGAAGAAGCTCCATCGAGTCTCTACAATAGGAAAGTTGACAGAAGGACTGAAC CCATCTTCACTGAAACGTTTGTACTTCCATGGCCCTTACCTGCCTCTGGTCATTAAAACTGGCATCTTGGCTGGAGTTCTGTCTCTTACTGAAGGAATTG CAGTGGGAAGAACATGCGCTAGCATGAGCAACTACCAAATTGACGGCAACAAGGAAATGATAGCAATTGGTGCCATGAATATCTGTGGCTGCTTATGCTC TTGCTACGTTGTCTCAGGAGGATTTGCTCGATCGGCAGTAAATTACAACGCAGGAGCAAAAACGGCGATTTCTAACCTCATAATGGCGCTAGCCGTGATG GTAACTCTGTTGTTGCTGATGCCGTTATTCTACTACACTCCTAACGCGGTATTAGCGGCCATTATAATTTCGGCCGTCATCGGATTCATCGACCTAAACG CAGCGTACCACCTCTACAAGCTCGACAAGCTTGACTTCCTCATCTTCTTATGTTCCTTCTTCGGCGTTCTCTTCCTCTCTGTCCCAATCGGGCTTGCAAT AGCTGTTGGGATTTCATTGTTGAAGATAATCCTGAATGTATCGAGGCCGTTCACGTCGGTGCTGGGGAACATCCCGGGGACTCGGATATATCGAGATATC GCGTGTTACAGTAACGCAGTTAGAGTTCCAGCTTTCCTCATTCTGAGCATCGAATCTCCCGTCTATTTCGCAAATTCGATGTATATCCAGGAAAGGATAT TGAGATGGATAAGGGAGGAAGAACAGAGGATTCAGGAAACAGGGGAGAGCATCCTCAAATGTGTAATCCTAGACATCACTGATGGTGAAATTGCAGCGGT GACGAACATTGACAGCAGCGGGATTGAAATGCTGAACCAGTTGAAGAGAACAATGGACATAAGTTTACTTCAGCTGGTACTAGTGAATCCAGTGGCAATT GTGATGGAGAGGCTTCAGAATGCTAGGTTCATGGCAACTTTCCAGACCAGAGGACTTTATTTGACCATTGGAGAAGCTGTTCTTGACATTTCTTCTTCAT GGAAACGTTAA
AA sequence Show only first row Show all	>Lus10019389 pacid=23181516 polypeptide=Lus10019389 locus=Lus10019389.g ID=Lus10019389.BGIv1.0 annot-version=v1.0 MVTTPPTEKHDEHHHHHHQNHTSIASASDFHTPLRLSIETPRAPNFSGNQQLPKIIDYDSSHQDQTSILIPNNATLLDHHDFPMGSPSAGISTNKNGNSF NNHVEIHDVCHPPHVSTCDKFKARLHEIFFPEDPFHVFRKKDQTLAMKFFKAIQYVFPIIGWLRSYDLDMFRSDAIAGLTIASLAIPQGISYAKLANLPA IIGLYSSFVPPLIYVVLGSSRHLGIGPVSVASLVIGSMLSESVSPDTQTELYVSLAFTATLFAGLLQAGLGIFRLGFIIDFLSKATLTGFMAGVAVIVIL QQLKGLFGIVHFTKQMQIIPVLKSVINEEKEWRWETVVICVSFLVILLIARNISARRPKLFWVSALAPLTSVIISTVIMFLFKKKLHRVSTIGKLTEGLN PSSLKRLYFHGPYLPLVIKTGILAGVLSLTEGIAVGRTCASMSNYQIDGNKEMIAIGAMNICGCLCSCYVVSGGFARSAVNYNAGAKTAISNLIMALAVM VTLLLLMPLFYYTPNAVLAAIIISAVIGFIDLNAAYHLYKLDKLDFLIFLCSFFGVLFLSVPIGLAIAVGISLLKIILNVSRPFTSVLGNIPGTRIYRDI ACYSNAVRVPAFLILSIESPVYFANSMYIQERILRWIREEEQRIQETGESILKCVILDITDGEIAAVTNIDSSGIEMLNQLKRTMDISLLQLVLVNPVAI VMERLQNARFMATFQTRGLYLTIGEAVLDISSSWKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10019389 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	5.1	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	7.2	1.0000
					Lus10011425 [exp]	9.8	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	10.2	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	12.5	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	12.6	1.0000
					Lus10007184 [exp]	13.5	1.0000
					Lus10007226 [exp]	14.4	1.0000
AT2G28605			Photosystem II reaction center...		Lus10009159 [exp]	15.3	1.0000
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	16.9	1.0000

Compare expression of checked genes

Lus10019389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.