Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27740 612 / 0 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G21690 125 / 1e-32 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 114 / 8e-29 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G63160 102 / 1e-24 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT5G45720 52 / 5e-07 AAA-type ATPase family protein (.1.2) AT4G18820 50 / 1e-06 AAA-type ATPase family protein (.1) AT4G24790 49 / 6e-06 AAA-type ATPase family protein (.1.2) AT2G02480 43 / 0.0003 STI STICHEL, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043248 [exp] 597 / 0 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 253 / 8e-79 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10041764 [exp] 251 / 2e-77 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10023809 [exp] 121 / 1e-32 AT5G27740 138 / 2e-39 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10025689 [exp] 118 / 4e-30 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 118 / 5e-30 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 112 / 7e-28 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10024504 [exp] 106 / 6e-26 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 105 / 1e-25 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040000 [exp] 637 / 0 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G120901 [exp] 244 / 1e-73 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.007G022900 [exp] 236 / 8e-73 AT5G27740 261 / 2e-82 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.003G093400 [exp] 160 / 4e-45 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.002G081200 [exp] 121 / 2e-31 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 115 / 4e-29 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.003G123200 [exp] 109 / 4e-27 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.002G080100 [exp] 82 / 5e-17 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.004G061700 [exp] 56 / 4e-08 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 52 / 5e-07 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10019391 pacid=23181510 polypeptide=Lus10019391 locus=Lus10019391.g ID=Lus10019391.BGIv1.0 annot-version=v1.0 ATGTTGTGGGTGGACAAGTACAGACCCAAAACCCTTGACCAAATGATCGTTCATGAAAATATCGCCCAAAATCTAAAGAAATTGGTTGCTGAGCAGGATT GCCCTCATTTGCTTTTCTATGGCCCCTCTGGTGCTGGGAAGAAGACACTGATTATGGCTTTGCTCCGTCAAATATTTGGCCCCGGTGCTGAAAAGGTGAA GGTGGAAAACAGGACGTGGAAAGTTGATGCTGGAAGTAGAACCATTGATCTTGAGTTGACTACATTAGCCAGTGCAAACCATGTGGAATTAAGTCCTAGT GATGCAGGCTTCCAGGATAGATACATTGTCCAGGAGATAATCAAAGAGATGGCCAGGAATAGGCCAATTGACACAAATGGAAAGAAATCATATAAAGTGA TAGTTCTTAATGAGGTTGACAAGCTTTCAAGAGAAGCCCAGCATTCTTTGCGAAGAACTATGGAGAAATATAGTAGTTCATGCCGGCTCATTTTGTGCTG CAACAGTTCTTCAAAGGTTACTGAGGCCATCCGGTCTCGTTGTCTGAATGTTCGAATTAATGCACCTTCAGAGGAACAGATAGTTAGGGTCTTGGAGTTC ATTGGGAAGAAAGAAGGGTTAGACATTCCATCTGGATTTGCTGGGCGTGTAGCTGAAAAATCAAATCGGAGTTTAAGGAGAGCCATACTCTCATTTGAGA CTTGCCGGGTTCAACAGTCCCCGCTCACAAATAATCAAGCTATTCCTCCAATGGACTGGGAAGAGTATGTTTTTGAAATATCGTCTGACATAATGAAGGA GCAGAGTCCTAAAAGATTGTTTCAGGTTCGAGGGAAGCTGTATGAATTACTTGTCAACTGTATTCCTCCCGAGATAATATTGAAGAGACTACTTTATGAG TTGTTGAGGAAATTGGACGAGGAGTTAAAGCATGAGGTTTGTCATTGGGCTGCATATTATGAACATAGAATGCAACAGGGGCAGAAAGCCATATTTCACC TGGAAGCATTTGTGGCAAAATTCATGAGCATATACAAGGCTTTCCTGGTAGCAACATTCGGGTGA
AA sequence Show only first row Show all	>Lus10019391 pacid=23181510 polypeptide=Lus10019391 locus=Lus10019391.g ID=Lus10019391.BGIv1.0 annot-version=v1.0 MLWVDKYRPKTLDQMIVHENIAQNLKKLVAEQDCPHLLFYGPSGAGKKTLIMALLRQIFGPGAEKVKVENRTWKVDAGSRTIDLELTTLASANHVELSPS DAGFQDRYIVQEIIKEMARNRPIDTNGKKSYKVIVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIRSRCLNVRINAPSEEQIVRVLEF IGKKEGLDIPSGFAGRVAEKSNRSLRRAILSFETCRVQQSPLTNNQAIPPMDWEEYVFEISSDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE LLRKLDEELKHEVCHWAAYYEHRMQQGQKAIFHLEAFVAKFMSIYKAFLVATFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	3.0	0.8744
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	3.7	0.8592
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	6.6	0.8105
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	8.0	0.8315
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	8.1	0.8528
AT4G20160			unknown protein		Lus10036249 [exp]	8.7	0.8455
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	9.9	0.7886
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	10.2	0.8444
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	10.2	0.8335
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10005103 [exp]	11.2	0.7400

Compare expression of checked genes

Lus10019391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.