Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32300 101 / 1e-24 UCC1 uclacyanin 1 (.1) AT2G31050 97 / 1e-23 Cupredoxin superfamily protein (.1) AT2G26720 96 / 7e-23 Cupredoxin superfamily protein (.1) AT5G20230 94 / 2e-22 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT5G26330 87 / 7e-20 Cupredoxin superfamily protein (.1) AT2G25060 86 / 8e-20 AtENODL14 early nodulin-like protein 14 (.1) AT4G30590 83 / 1e-18 AtENODL12 early nodulin-like protein 12 (.1) AT1G72230 83 / 1e-18 Cupredoxin superfamily protein (.1) AT3G17675 80 / 2e-18 Cupredoxin superfamily protein (.1) AT4G31840 80 / 2e-17 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006657 [exp] 168 / 8e-49 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 167 / 2e-48 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10025752 [exp] 114 / 1e-29 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10035911 [exp] 111 / 1e-28 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10010533 [exp] 96 / 5e-23 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 95 / 8e-23 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 95 / 9e-23 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10002614 [exp] 92 / 2e-22 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10041211 [exp] 93 / 5e-22 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G067300 [exp] 164 / 6e-48 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129200 [exp] 147 / 7e-42 AT2G32300 94 / 9e-23 uclacyanin 1 (.1) Potri.006G067400 [exp] 111 / 3e-29 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129400 [exp] 105 / 1e-26 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.001G192100 [exp] 105 / 1e-26 AT5G20230 100 / 2e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G259000 [exp] 99 / 1e-24 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 99 / 2e-24 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 96 / 2e-23 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 97 / 3e-23 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 95 / 5e-23 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10019405 pacid=23181610 polypeptide=Lus10019405 locus=Lus10019405.g ID=Lus10019405.BGIv1.0 annot-version=v1.0 ATGGCGGCGACTGCAATCAGGTTCATGACTTCCTTCACATTTGCAGCAGCAATCTTCATCGCCGCCGTCCTTCTTCTTCCGAACTCCGTCGACGCTCAGA CCACCCACACCGTCGGCGGCACCACCGGATGGGCAATCCCTCAAGGCAGCCCTTCCTTCTACTCTACTTGGGCCGCCAACAACTCCTACTCCGTCGGAGA TGTTCTCGTATTCAATTTTGCTGCGGGAATTCACGACGTGACGGAGGTCACCAAGGCGGATTACGACGCCTGCACCTCCACGAATCCGTTGACGCTCGTG ACCACCAGTCCAGCCATGGTTACTTTGAACTCCGCCGGCGACCATTACTTCATCTGTAATTTCCCCGGCCACTGCGGTGCAGGGCAGAAGGTAACAGTTA ACGTTCTTGGTTCTACGGCTACTGCGCCTTCTCCGGCTCCTTCTTCTATGACTCCTCGTCCTCGATCTCCTCCTCCGGCGGTCTCTGCTCCTCCTCCGGC TATGTCTGCTCCTTCTCCGGCGATGTCTGCTCCTCCTCCGGCGATGAACTCTGCTCCTGTTCCGGCTCCGTCTACTTCCCCTGTTCCCGGGGATGTTCCC TCGTCAGCCCCAGGACCGGCTTCTAGGCCGCCGATGACTTACACCGTAGGGGATGCGTTTGGATGGAATATTCCTACCACCGGTGGTGCTAATATGTTCA GGAATTGGGCCGCCGGGAAGGACTTCATGGTGGGCGACACTCTTGTTTTCAACTACAGCGCTGGAGCACACAACGTGGCGGAGGTGACCAGAGCTGCTTT CACAGCTTGCACAATAACCAACCCAATCTCCATCGACCGCACCCCACCGAGCAGGGTAACCCTCACCTCTACCGGAGAGCATTATTACATCTGCGCCGTC CCCGGACACTGCAGCCTCGGCCAAGTCCTTTCCATTAATGTCACCGGCGCCGCAGCGACCACCCCCACTGGCTCCCCATCGGGATCGCCGCCGCCCGGAT CTATGACCCCGTCGTCGCCGTCTCCGCCGGGTGTATCAGCCCCACCGCCGCCCAACTCCGCCAGTTCTCTCGCCGGAGTCTCCGCCGCCACAATTTTGTC CGTATTAGTAGTATCTCTATTGTTCTAG
AA sequence Show only first row Show all	>Lus10019405 pacid=23181610 polypeptide=Lus10019405 locus=Lus10019405.g ID=Lus10019405.BGIv1.0 annot-version=v1.0 MAATAIRFMTSFTFAAAIFIAAVLLLPNSVDAQTTHTVGGTTGWAIPQGSPSFYSTWAANNSYSVGDVLVFNFAAGIHDVTEVTKADYDACTSTNPLTLV TTSPAMVTLNSAGDHYFICNFPGHCGAGQKVTVNVLGSTATAPSPAPSSMTPRPRSPPPAVSAPPPAMSAPSPAMSAPPPAMNSAPVPAPSTSPVPGDVP SSAPGPASRPPMTYTVGDAFGWNIPTTGGANMFRNWAAGKDFMVGDTLVFNYSAGAHNVAEVTRAAFTACTITNPISIDRTPPSRVTLTSTGEHYYICAV PGHCSLGQVLSINVTGAAATTPTGSPSGSPPPGSMTPSSPSPPGVSAPPPPNSASSLAGVSAATILSVLVVSLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	0	1
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	5.1	0.8540
					Lus10039441 [exp]	5.7	0.8220
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	7.4	0.8032
AT5G41590			Protein of unknown function (D...		Lus10017526 [exp]	9.8	0.8070
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	10.1	0.7801
AT4G32020			unknown protein		Lus10001936 [exp]	11.0	0.8122
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022090 [exp]	12.4	0.7410
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	16.5	0.7567
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	21.5	0.7607
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	23.0	0.7868

Compare expression of checked genes

Lus10019405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.