Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15460 803 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT1G74810 766 / 0 BOR5 HCO3- transporter family (.1) AT4G32510 747 / 0 HCO3- transporter family (.1) AT5G25430 746 / 0 HCO3- transporter family (.1) AT2G47160 670 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G62270 667 / 0 HCO3- transporter family (.1) AT3G06450 622 / 0 HCO3- transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043299 [exp] 1025 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10008083 [exp] 797 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 796 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10038060 [exp] 664 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10032651 [exp] 654 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10009995 [exp] 617 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 583 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154700 [exp] 832 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 822 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 821 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.018G031700 [exp] 805 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 795 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.008G100300 [exp] 662 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 652 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 650 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 645 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 638 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10019443 pacid=23181495 polypeptide=Lus10019443 locus=Lus10019443.g ID=Lus10019443.BGIv1.0 annot-version=v1.0 ATGAAAGGTTTAATTCAGGACTTCAAAGGAAGAAAAGCTGTATATGGCGATGACTGGACCAATGCTTTCGCCGTCGGTCCCAGGATATTTGCTCCAATCG CATACATCTTCTTTGCGTCTGCACTTCCTGTCATTGCTTTCGGCGAACAACTCAGCCGTGAAACAGATGGATGCCTAAGCACAGTGGAGACATTAGCTTC AACAGCTCTATGCGGAATAATTCATTCGTTAATTGGAGGGCAGCCATTGTTGATTGTGGGAGTTGCAGAACCAACGGTGATAATGTACCATTACCTTTAT TCTTTTGCCAAAACATCAGACTCTGTTGGGAAAACGTTGTACCTTGCTTGGGCGGGATGGGTGTGTGTATGGACGGCTCTCATGCTTATCCTGCTAGCTG TATTCGACGCTTGCAACATCCTCAACAAGTTCACAAGGCTTGCAGGGGAGACATTTGGGATGTTGATTTCTGTCCTCTTCTTTCAGCAGGCCATCAAGGG AATGGTGGGAGAGTTCAGCCTTGTAGAGCACGAGGACACAAAATCACCAGACAGCAGCTTCCAATGGCTGTACGTGAATGGACTGCTGGGAGTCATATTC ACCTTTGGGGTATTAATCACAGCTCTCAAGAGTAGAAAGGCAAGGTCTTGGGATTATGGCACCGGATGGTTTCGGAGCCTCATCGCAGATTATGGTGTCC CTCTAGTCGTCATGTTTTGGGCAGCATTGTCACTAACCATCCCTAGTCAGGTCCCGGAAGGCATTCCACGTCGCCTTCAGACTCCTCTCCCTTGGGAACC TGCTTCCATGTCTCATTGGACTGTCTTCATGGATATGGGAAAAGTGCCACCAGGGTTCATCCTGGCTGCAATCATACCAGCAGTGATGGTTGCAGGACTC TACTTTTTCGACCATAGCGTTGCATCACAGATGGCACAGCAGAAAGAGTTCAACATCAAGAAGCCTTCTGCTTACCATTATGACATCTTTATCCTTGGCA TTACGACATTGATATGTGGACTGATTGGGCTTCCACCTTGCAACGGAGTCCTCCCACAGTCTCCTATGCACAGTAAGAGTCTCTCAGTTCTCAGTGGACA GCTGATAAGGAAGAAGATGGTGCAAACAGCCAAGGAAAGCATGATGCAAAAGGATAGCAAATCCAAGGTTTATGGGAAAATGGAAGAGGCTTTTGTCGAA ATGGATGGAACTGCAGGACCTTCAGCAGCTAAGGAGTTGAAGAACTTGAAAGAAGCAGTGATGAGATCTGGAAATGAAGGAAGCAAAGATGATGGTGAAA GCTTTGACCCAGAGAAGATTGATGCTTACTTGCCAGTGAGGGTAATTGAGCAAAGGTTAAGCAACTTCTTGCAGTCTCTTCTTATTGGGTTGTCACTTCT GGCAATGCCAGTCATAAAAAAGATCCCAACTTCAGTACTTTGGGGTTACTTTGCTTACATGGCAATTGACAGTCTCCCTGGAAACCAGTTCTGGGAAAGG CTCGTCATGCTCCTCATTGCTCCTAGCAGACGCCACAAGATTATGGAAAAGCCTCATGCATCATTCGTGGAGACTGTACCGTTCAAACAAATAACAAAGT TCACAACATTCCAGATAATTTACTTCTTGCTCTGTTTTGGGGTGACATGGATTCCCATTGCTGGAATATTGTTCCCACTGCCATTCTTCTTCCTGATAAG CATTCGAGAAAAAATATTGCCAAAGTACTTCCAACCTCAACACCTGAAAGAGATGGATGGTGTTGAGTATGAAGAAGTTGAAGGAGACCCATTACGCAGC CGTTCCTTGTCTTTAAGGAGGATCAGTTCGAGAGATGGAGCTGGATTTGAGCCACAAGATGCTGAGATATTCGATGAGCTGACCACCGGAAGAGGAGAGC TGAGGCTACGATCTACAAGTGTTAGCCAGGAAAGGAGCAACCAGGCAAGATGA
AA sequence Show only first row Show all	>Lus10019443 pacid=23181495 polypeptide=Lus10019443 locus=Lus10019443.g ID=Lus10019443.BGIv1.0 annot-version=v1.0 MKGLIQDFKGRKAVYGDDWTNAFAVGPRIFAPIAYIFFASALPVIAFGEQLSRETDGCLSTVETLASTALCGIIHSLIGGQPLLIVGVAEPTVIMYHYLY SFAKTSDSVGKTLYLAWAGWVCVWTALMLILLAVFDACNILNKFTRLAGETFGMLISVLFFQQAIKGMVGEFSLVEHEDTKSPDSSFQWLYVNGLLGVIF TFGVLITALKSRKARSWDYGTGWFRSLIADYGVPLVVMFWAALSLTIPSQVPEGIPRRLQTPLPWEPASMSHWTVFMDMGKVPPGFILAAIIPAVMVAGL YFFDHSVASQMAQQKEFNIKKPSAYHYDIFILGITTLICGLIGLPPCNGVLPQSPMHSKSLSVLSGQLIRKKMVQTAKESMMQKDSKSKVYGKMEEAFVE MDGTAGPSAAKELKNLKEAVMRSGNEGSKDDGESFDPEKIDAYLPVRVIEQRLSNFLQSLLIGLSLLAMPVIKKIPTSVLWGYFAYMAIDSLPGNQFWER LVMLLIAPSRRHKIMEKPHASFVETVPFKQITKFTTFQIIYFLLCFGVTWIPIAGILFPLPFFFLISIREKILPKYFQPQHLKEMDGVEYEEVEGDPLRS RSLSLRRISSRDGAGFEPQDAEIFDELTTGRGELRLRSTSVSQERSNQAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	0	1
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	2.6	0.9229
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	4.2	0.9186
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	6.6	0.8853
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	7.7	0.8969
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	8.1	0.9070
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	8.9	0.8780
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	9.5	0.8866
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	12.8	0.8409
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	13.2	0.8926
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	13.3	0.8744

Compare expression of checked genes

Lus10019443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.