Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03500 199 / 3e-57 GARP Homeodomain-like superfamily protein (.1) AT1G25550 135 / 7e-35 GARP myb-like transcription factor family protein (.1) AT1G68670 124 / 5e-31 GARP myb-like transcription factor family protein (.1) AT4G37180 105 / 1e-24 GARP Homeodomain-like superfamily protein (.1.2) AT1G13300 97 / 7e-22 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT1G49560 92 / 4e-20 GARP Homeodomain-like superfamily protein (.1) AT3G25790 89 / 7e-19 GARP myb-like transcription factor family protein (.1) AT4G28610 66 / 2e-11 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT2G02060 63 / 7e-11 GARP Homeodomain-like superfamily protein (.1) AT2G38300 64 / 8e-11 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043304 [exp] 434 / 8e-147 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 132 / 2e-33 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 127 / 4e-32 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10020995 [exp] 104 / 7e-24 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10034280 [exp] 101 / 4e-23 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10012056 [exp] 101 / 5e-23 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10041485 [exp] 100 / 4e-22 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10009334 [exp] 96 / 1e-21 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10019639 [exp] 91 / 1e-19 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155200 [exp] 223 / 7e-66 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.018G074200 [exp] 219 / 2e-64 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.008G117500 [exp] 133 / 6e-34 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 130 / 1e-32 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.007G039400 [exp] 125 / 2e-31 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.009G106600 [exp] 105 / 2e-24 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 104 / 7e-24 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.005G134600 [exp] 100 / 2e-22 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.008G142000 [exp] 62 / 3e-10 AT1G14600 130 / 2e-36 Homeodomain-like superfamily protein (.1) Potri.013G060200 [exp] 61 / 9e-10 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019452 pacid=23181544 polypeptide=Lus10019452 locus=Lus10019452.g ID=Lus10019452.BGIv1.0 annot-version=v1.0 ATGGCATCTCCATCTGAGCTAAGCTTGGATTGCAAACCCCACAGCCATTCTTTGCTTCTGAAATCTTTCTCGGACCAGATCGTTGCGAATAACGCTCCTC GGGACGATCAGAAACACAAGCTTGAAGAGTTTCTTTCTCGGCTCGAGGAAGAAAGGATCAAGATCGATGCTTTCAAGCGCGAGCTCCCACTCTGCATGCA ACTACTAACTAATGCTATGGAAAGCTCGAGGCAACAACTCGAAGCATACAGGGGATCGAGGCAGCAGCCAGCAGCTGTAGTACTGGAAGAGTTCATACCC ATGAAGAACACAGTAGCACCACCACCACCATCGTCGTCGTCTGATCAAATAGTTGTGTCGACGGACAACAAGGCCAACTGGATGACCACAGCTCAGCTAT GGAGCCAAGACACCAAGCCTGCTCTTCACCATGAAAAAGATGAAACCTTTCTTCGAGATGACAACAATTCGACGATGGGTTTCAGTGTAATGAAACAGAG GAGGAATTCATGTAACGGTAGTACCGGAGCTTTCCTTCCATTCTCCAAAGAAAGGAATAATGACTCTAACTGCACTCTGGCACTTGCGGCCTCGACAGAG AACAATAGCAACAAGTTAGATCACGAGGAGGAAGATGAAAAGATCGTTGCGAATAACGCTCCTCGGGACGATCAGAAACACAAGCTTGAAGAGTTTCTTT CTCGGCTCGAGGAAGAAAGGATCAAGATCGATGCTTTCAAGCGCGAGCTCCCACTCTGCATGCAACTACTAACTAATGCTATGGAAAGCTCGAGGCAACA ACTCGAAGCATACAGGGGATCGAGGCAGCAGCCAGCAGCTGTAGTACTGGAAGAGTTCATACCCATGAAGAACACAGTAGCACCACCACCACCATCGTCG TCGTCTGATCAAATAGTTGTGTCGACGGACAACAAGGCCAACTGGATGACCACAGCTCAGCTATGGAGCCAAGACACCAAGCCTGCTCTTCACCATGAAA AAGATGAAACCTTTCTTCGAGATGACAACAATTCGACGATGGGTTTCAGTGTAATGAAACAGAGGAGGAATTCATGTAACGGTAGTACCGGAGCTTTCCT TCCATTCTCCAAAGAAAGGAATAATGACTCTAACTGCACTCTGGCACTTGCGGCCTCGACAGAGAACAATAGCAACAAGTTAGATCACGAGGAGGAAGAT GAAAAGGTCAAATGTTCTGATCAGCCGGTGAACGTGATTATTAATGGGTTTTCATCAGAGAGTAACGGCGGTGGTGGGAATGCAACGGCGGCTGTGGCTG CGGCGGCGACAGGAGGAAGCAACAGTCAGAGGAAGGCTAGGAGATGTTGGTCGCCTGATTTGCACAGGAGATTTGTGAATGCTCTACAAATGCTTGGTGG CTCCCAAGTGGCTACACCAAAGCAAATCAGAGAACTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGTCACCTCCAGTTTGGTATCACTACC GCTCACCCACCACCGCCTTCCCACTTCTACTCCGTTCCTCCTCCGCAAGATTACTACACTGCTGCCGGACTGCCGATGCAGGCTCTTCCTCCTCCTCATA CTCCGCCAACGTCCCACCACCACCTCCACCACCACCACCAGATCCAGCTCTACAAGGCTTCTCCGTCGTCGCAGGCCCACAGCTCCGGACAGGATTCGGA CGACAGGGCAGCCGGGGACAGGTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGCGGGAGCTGGAAAGCAGGGGAGAGCGGAGACAATGCTGGCGGCGAT GGAGGAGAGAGAAAAGATAGAGAGGAATGCAATCGGAGAGAGATCACCCTCAAATTCTAA
AA sequence Show only first row Show all	>Lus10019452 pacid=23181544 polypeptide=Lus10019452 locus=Lus10019452.g ID=Lus10019452.BGIv1.0 annot-version=v1.0 MASPSELSLDCKPHSHSLLLKSFSDQIVANNAPRDDQKHKLEEFLSRLEEERIKIDAFKRELPLCMQLLTNAMESSRQQLEAYRGSRQQPAAVVLEEFIP MKNTVAPPPPSSSSDQIVVSTDNKANWMTTAQLWSQDTKPALHHEKDETFLRDDNNSTMGFSVMKQRRNSCNGSTGAFLPFSKERNNDSNCTLALAASTE NNSNKLDHEEEDEKIVANNAPRDDQKHKLEEFLSRLEEERIKIDAFKRELPLCMQLLTNAMESSRQQLEAYRGSRQQPAAVVLEEFIPMKNTVAPPPPSS SSDQIVVSTDNKANWMTTAQLWSQDTKPALHHEKDETFLRDDNNSTMGFSVMKQRRNSCNGSTGAFLPFSKERNNDSNCTLALAASTENNSNKLDHEEED EKVKCSDQPVNVIINGFSSESNGGGGNATAAVAAAATGGSNSQRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQFGITT AHPPPPSHFYSVPPPQDYYTAAGLPMQALPPPHTPPTSHHHLHHHHQIQLYKASPSSQAHSSGQDSDDRAAGDRSESIEDGKSESGSWKAGESGDNAGGD GGERKDREECNRREITLKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	0	1
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	1.4	0.9687
AT4G16790			hydroxyproline-rich glycoprote...		Lus10004758 [exp]	1.4	0.9451
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	2.6	0.9188
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	3.2	0.9277
AT1G60360			RING/U-box superfamily protein...		Lus10025612 [exp]	5.7	0.9357
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	5.7	0.9324
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	6.9	0.9061
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	8.8	0.9193
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	10.0	0.8919
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	12.0	0.9177

Compare expression of checked genes

Lus10019452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.