Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51990 173 / 3e-54 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25470 161 / 1e-49 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25480 161 / 2e-49 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT4G25490 157 / 5e-48 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT1G63030 125 / 5e-36 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT1G12610 123 / 1e-34 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 87 / 2e-20 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 85 / 7e-20 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 84 / 1e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 83 / 9e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027412 [exp] 211 / 6e-69 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10031657 [exp] 192 / 2e-61 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10027414 [exp] 157 / 4e-48 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031654 [exp] 149 / 5e-45 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10001871 [exp] 139 / 9e-41 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 139 / 2e-40 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029601 [exp] 138 / 4e-40 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10017829 [exp] 133 / 6e-39 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10006332 [exp] 134 / 1e-38 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134100 [exp] 181 / 9e-57 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 173 / 8e-54 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 152 / 1e-45 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.001G110700 [exp] 143 / 3e-42 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.009G147700 [exp] 104 / 8e-27 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.014G055700 [exp] 91 / 7e-22 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.004G187001 [exp] 90 / 3e-21 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.003G050700 [exp] 86 / 2e-20 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 85 / 4e-20 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 84 / 2e-19 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10019455 pacid=23181522 polypeptide=Lus10019455 locus=Lus10019455.g ID=Lus10019455.BGIv1.0 annot-version=v1.0 ATGGCCAGCTCCAGCACTAATGAACTACTCTCAAGTCAGCAGCTATCCCCGACAACGGCAGGGCGGTCGGCCATCTCAGACGAAGAGGTGGTGATGAAGC TAGCGTCGAGCCACCCGAAGAAGCGGGCAGGGAGGAAGAAGTTCACCGAGACTCGTCACCCTATCTACCGCGGTGTGCGGCTCCGGAGCACAGGTAAATG GGTTTGCGAGGTCAGGGAGCCCAACAGTAAGTCAAGGATCTGGCTGGGGACTTTCCCCACCGTGGAAATGGCTGCCCGCGCTCACGACGTGGCTGCTCTT GCTCTTAGAGGGACCTCTGCCTGCTTGAACTTCGAAGACTCTGTTTCCCGGCTGCGCATTCCGGACTCGACCGATACGAGGGAGATCCAGCGTGCGGCTG CTGAGGCTGCAGAGGCATTCCGCCCTCCCGAGCTGCTGCAGGCTGCGAGTAGTAGTGATACGGCGGCGGTCGTAGTGGGCGATGATGACAAAGGGGCTCC GGAGGAGGATAATAACAATAATATGTTGTTTTATATGGAGGAGGAGGAGGAGGATGAAGCGTCAATGTTCGGAATGCCGGGGTTGTTGGCGAATATGGCG GAAGGAATGCTGCTGCCTCCTCCGCCGAGGGATGACATGGCGGGTGGGGGTGATGATGACGATGATGATGCCGGTGATGTGTCCTTGTGGAGTTTCTCTA TTTGA
AA sequence Show only first row Show all	>Lus10019455 pacid=23181522 polypeptide=Lus10019455 locus=Lus10019455.g ID=Lus10019455.BGIv1.0 annot-version=v1.0 MASSSTNELLSSQQLSPTTAGRSAISDEEVVMKLASSHPKKRAGRKKFTETRHPIYRGVRLRSTGKWVCEVREPNSKSRIWLGTFPTVEMAARAHDVAAL ALRGTSACLNFEDSVSRLRIPDSTDTREIQRAAAEAAEAFRPPELLQAASSSDTAAVVVGDDDKGAPEEDNNNNMLFYMEEEEEDEASMFGMPGLLANMA EGMLLPPPPRDDMAGGGDDDDDDAGDVSLWSFSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10019455 [exp]	0	1
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	2.0	0.8393
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	7.9	0.8070
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	11.0	0.8005
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	11.1	0.8303
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	16.7	0.7552
AT4G02630			Protein kinase superfamily pro...		Lus10018722 [exp]	20.0	0.7601
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	27.3	0.7722
					Lus10040145 [exp]	28.1	0.7626
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	28.8	0.7799
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	30.4	0.7780

Compare expression of checked genes

Lus10019455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.