Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24710 655 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G53230 89 / 2e-18 ATPase, AAA-type, CDC48 protein (.1) AT2G27600 83 / 7e-17 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT5G03340 82 / 2e-16 ATPase, AAA-type, CDC48 protein (.1) AT5G19990 81 / 2e-16 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 81 / 2e-16 RPT6A AAA-type ATPase family protein (.1) AT3G56690 81 / 8e-16 CIP111 Cam interacting protein 111 (.1) AT3G19740 78 / 4e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58290 77 / 4e-15 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G52882 78 / 5e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043321 [exp] 839 / 0 AT4G24710 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023018 [exp] 84 / 8e-17 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 83 / 1e-16 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 82 / 2e-16 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10017762 [exp] 81 / 3e-16 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10020589 [exp] 81 / 4e-16 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 81 / 4e-16 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 80 / 7e-16 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10013429 [exp] 81 / 1e-15 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086400 [exp] 694 / 0 AT4G24710 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G084900 [exp] 693 / 0 AT4G24710 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G237100 [exp] 87 / 3e-18 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.016G091600 [exp] 87 / 4e-18 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 87 / 8e-18 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.009G144300 [exp] 86 / 8e-18 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G035000 [exp] 85 / 3e-17 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.008G022216 [exp] 84 / 3e-17 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 83 / 5e-17 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.012G088200 [exp] 83 / 1e-16 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10019473 pacid=23181552 polypeptide=Lus10019473 locus=Lus10019473.g ID=Lus10019473.BGIv1.0 annot-version=v1.0 ATGACGACCCCGATGGAGATCTCTGCGTCGAGCTCCGTTACTGAAACCCACATTCCCGACCAGAACGGCCCTCCGCTGCTCCCCGCACCAAATCCTCCTC CGTCAATCCACGAAGACAAGTTTCATGTTTCTGTTGAAGTTTGCTTAAAAGCTTCCAGCACTGCTCGACCTCAGGACGTCTGCTCAGCTGTTGAAAGAAT GCTGGAAATGAGGAGCACGAGCTATATCGATGGACCGGTACCCGTGCCTATTGATGATCCTTTTCTTGTTGAGAACATTGACAGGATATGTATATGTGAT GCAGATGAAGGGATAAAGAACCGTAGAATTCTCTTGTTCTGGCAAGTCAAACCTCTTGTTCACGTCTTTCAGCTTAGTGATGAAGGACCATGTGAAGAGC TGAGTGGAGATGGTCAACTCGCTAGCTTCAATGAATGGATTCTTCCTGCAACGGAATTTGATGGCTTGTGGGAAAGCTTGATTTATGAATCCGGTCTCAA GCAAAGGTTGTTGCGATATGCTGCAAGTGCGTTGCTCTTTACTGAAAAGGGTGTGGACCCTTTCCTTGTGTCCTGGAACCGCATTGTTCTTTTACATGGT CCTCCAGGTACTGGCAAGACGTCTTTATGCAAGGCCCTTGCTCAAAAGCTCTCAATACGGTTCAATTCCAGATATCCACAGTGCCAGCTGATTGAAGTCA ACGCTCATTCTCTGTTCAGCAAATGGTTCTCTGAAAGTGGCAAGTTGGTCGCTAAGCTTTTCCAGAAGATTCAAGAGATGGTAGAGGAAGACAACAATCT GGTATTTGTTTTGATTGATGAAGTTGAAAGCCTAGCTGCTGCTAGAAAAGCTGCTTTGTCAGGCTCTGAACCTTCAGACTCTATTCGGGTCGTGAATGCG TTACTAACTCAGATGGACAAATTGAAATCTTCACCAAATGTGATTATTCTGACTACATCCAATATTACTGCCGCAATTGATATTGCATTTGTTGATCGAG CTGATATTAAGGCATATGTTGGCCCTCCTAGTCTTGAAGCTCGTTATGAGATTCTGAGATCTTGCTTGCAAGAACTTATCCGAACCAGAATAGTATCAAA TTTCCAGGGTTTCGACGACCTAAAGTTTCCAGATTATTCAACGTTGAAAGAGAAATTAGGTGCACTTGATGCACAAGAAGCGCAAACATGCTCGTTGCTG CTGTATAAACAATTGCTTGATGCTGCAGAGGCATGTGAGGGGTTGAGTGGTAGGTCGCTGCGAAAGCTTCCATTTCTCGCACATGCATCTCTTTCAACTC CAGGCAGTAGTGACCCGACTAAGTTCTTAAGCACATTGATTAATACGGCAAGAAGGGAGCATTCTGAACTACTGGGTTCATGA
AA sequence Show only first row Show all	>Lus10019473 pacid=23181552 polypeptide=Lus10019473 locus=Lus10019473.g ID=Lus10019473.BGIv1.0 annot-version=v1.0 MTTPMEISASSSVTETHIPDQNGPPLLPAPNPPPSIHEDKFHVSVEVCLKASSTARPQDVCSAVERMLEMRSTSYIDGPVPVPIDDPFLVENIDRICICD ADEGIKNRRILLFWQVKPLVHVFQLSDEGPCEELSGDGQLASFNEWILPATEFDGLWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHG PPGTGKTSLCKALAQKLSIRFNSRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEDNNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPSLEARYEILRSCLQELIRTRIVSNFQGFDDLKFPDYSTLKEKLGALDAQEAQTCSLL LYKQLLDAAEACEGLSGRSLRKLPFLAHASLSTPGSSDPTKFLSTLINTARREHSELLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	1.0	0.9668
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	3.2	0.9665
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	3.9	0.9556
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	5.2	0.9611
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10009836 [exp]	7.2	0.9464
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	7.5	0.9604
AT5G37010			unknown protein		Lus10020782 [exp]	7.9	0.9397
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	8.1	0.9531
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	8.1	0.9392
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	10.5	0.9506

Compare expression of checked genes

Lus10019473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.