Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 311 / 5e-95 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 181 / 4e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 179 / 1e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 179 / 2e-47 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 172 / 2e-45 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 169 / 3e-44 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G35450 167 / 1e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 165 / 8e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 162 / 3e-42 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58807 161 / 1e-41 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041243 [exp] 581 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 526 / 4e-177 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 518 / 4e-174 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 513 / 4e-172 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 508 / 5e-170 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 360 / 6e-113 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 332 / 5e-103 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 211 / 2e-58 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 211 / 2e-58 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 330 / 2e-102 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 269 / 2e-79 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 265 / 3e-78 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G009900 [exp] 254 / 2e-77 AT3G07040 285 / 1e-86 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.011G165700 [exp] 246 / 5e-71 AT3G07040 471 / 1e-151 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 244 / 2e-70 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 238 / 4e-68 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134425 [exp] 232 / 2e-67 AT3G07040 347 / 6e-107 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 233 / 3e-66 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 231 / 9e-66 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10019530 pacid=23181518 polypeptide=Lus10019530 locus=Lus10019530.g ID=Lus10019530.BGIv1.0 annot-version=v1.0 ATGGCTGGACTTCCGATGGACTGCTTGGCCCAGAAGCTGGATTCTCTGCTTCAAAACGAGGTTACCTTGTTTGAACAAGCTCGCCATCAAGTTGAAGAGA TCAAGCACGAACTGGCATCTCTGAGGTCATTCCTAGAGGATTCAACCAATTCGAATTCATCGACCCACTCCAAACTGAGGCAAGCCCAAATTGCCTACGT CAGAGATTTGGTCTATGACGTTGAAGACACCATCGACCAGTTCATCTACCACCGGAGAAAGTGGCGGAGCAGCCGCCATAGGTACCTCCGGTCAACTCTT TGCTTCCCTCTCTTTTTCTGGGAGCGGCGTCAGATTGCCGCCATACTCGGAGAAATCGACTCTTTGATCAAAGCCATCCCCGAGAGATATCGACGGTATA AATTGGAGGAGGACAATAATAATCAAGCTAAAGGGGAGTACGGCGGGCCCACTTCCGATGCAGAGTCGGCTCTGTTTCTGAAAGAGGAAGAACTTGTTGG GATTGTAGCATCTGAGGAAACAATCACCTGCTGGCTCATCGGCGGCGATTCGCGGCTGACGACTGTTTCCGTCTTCGGAATGGGAGGATCCGGTAAGACC ACTCTGGTAGCTTATGTGTTCAATTCCCCTGTTGTGAAACGTTGCTTTGATTGTTGTGCTTGGATCTCTGTCCCCCGGTTGTTTGTAATTGAAGATTTGT TAAGAAGCTTGATTAGGGAGTTGAACAAATCAGCCCCAATGGTGGTAGGAGTTTTAGCTATGGACGAGTTGAGCACGATGCAATATCGAGATCTCGTCGA GAATCTTATGAATTGTTTGGAACAGAAAAGATATCTAGTAGTTCTTGACGATGTTTGGAATGCAAACGTTTGTAGTCGGATCAAAGCGTCTCTTCCAGAC GGCCAGAATGGTAACCGAATCATACTCACAACTCGGATGGAGGACATTGCAATCCATGGAGGAGGGAGCCACAGTTTCCACGTGAAGCCGCTGGAAAAGG AAAAGGCATGGGAGTTATTTTGCAGGAGAGCATTTTCCAGAGAATGCCCTCCTCGGCTCCAGGATCTAGCTGCTGAAATTGTTGAGAAATGCCAAGGCTT CTCTCTTGCGATTGTTTCGATGGGCGGTCTTTTCTCCACCAAAAGATGTTCCGTAGCTGAATGGACGAGGGTTTGTGAGAATCTGCAATGGGAGTTGAGC AACAATCAGATACTTGAACCCGTTAAAAGTATCCTGCTTTTGAGCTACTGTGACCTGCCGTATCGATTGAAGCTTACTAGACTGTGGATGGCTGAGGGAT TTGTGGAAGTAGAGGCGGATGGGGGAATAACACCGGAGGAGGTTGCTAACAGATACCTTAACGAACTGATTCGTCGAAACATGCTTCAATCTGTGGATTC ACAACTCTCTATGAACGTAGAATGTGCAAGATGCATGATATGTATAGAGAGGTCGACGATGGCATTGAAAGATTTTCGGAGACTAGAAAGCATATCCATG GCGGAAGGGGCCATGCCGGGCATCAATATGCTTCAGATCCGTAGTTGCATGAATCTTAAAACTGCAGCACAAGGTATCCAGCATCTGTCTCAACTTGAGG AGTTGAGATTGGAATACGTTTTGGCTGAACTTGTGGAGCGAATTCGTGGAACGGATCGCCTCTCCTTTCTGCACATCCCTCTCGTTCGATGTCACTACTA CTCATCAACTCGACAGCAGTACCTTCGCGAACGTATCAAGTTACCGATAGCAGCAGTACGGATATGA
AA sequence Show only first row Show all	>Lus10019530 pacid=23181518 polypeptide=Lus10019530 locus=Lus10019530.g ID=Lus10019530.BGIv1.0 annot-version=v1.0 MAGLPMDCLAQKLDSLLQNEVTLFEQARHQVEEIKHELASLRSFLEDSTNSNSSTHSKLRQAQIAYVRDLVYDVEDTIDQFIYHRRKWRSSRHRYLRSTL CFPLFFWERRQIAAILGEIDSLIKAIPERYRRYKLEEDNNNQAKGEYGGPTSDAESALFLKEEELVGIVASEETITCWLIGGDSRLTTVSVFGMGGSGKT TLVAYVFNSPVVKRCFDCCAWISVPRLFVIEDLLRSLIRELNKSAPMVVGVLAMDELSTMQYRDLVENLMNCLEQKRYLVVLDDVWNANVCSRIKASLPD GQNGNRIILTTRMEDIAIHGGGSHSFHVKPLEKEKAWELFCRRAFSRECPPRLQDLAAEIVEKCQGFSLAIVSMGGLFSTKRCSVAEWTRVCENLQWELS NNQILEPVKSILLLSYCDLPYRLKLTRLWMAEGFVEVEADGGITPEEVANRYLNELIRRNMLQSVDSQLSMNVECARCMICIERSTMALKDFRRLESISM AEGAMPGINMLQIRSCMNLKTAAQGIQHLSQLEELRLEYVLAELVERIRGTDRLSFLHIPLVRCHYYSSTRQQYLRERIKLPIAAVRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10019530 [exp]	0	1
AT1G64385			unknown protein		Lus10033958 [exp]	2.2	0.9051
					Lus10021189 [exp]	7.9	0.8766
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	10.1	0.8832
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	11.8	0.8405
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	21.5	0.8430
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10029049 [exp]	24.7	0.8360
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10015247 [exp]	28.7	0.7840
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	31.1	0.8642
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	31.2	0.8590
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	42.0	0.8427

Compare expression of checked genes

Lus10019530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.